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ZNF260 (zinc finger protein 260)

Identity

Alias_symbol (synonym)ozrf1
Zfp260
Other aliasOZRF1
PEX1
ZFP260
HGNC (Hugo) ZNF260
LocusID (NCBI) 339324
Atlas_Id 76060
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36510687 and ends at 36528346 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF260 (19q13.12) / SCGB2B2 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF260   13499
Cards
Entrez_Gene (NCBI)ZNF260  339324  zinc finger protein 260
AliasesOZRF1; PEX1; ZFP260
GeneCards (Weizmann)ZNF260
Ensembl hg19 (Hinxton)ENSG00000254004 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254004 [Gene_View]  chr19:36510687-36528346 [Contig_View]  ZNF260 [Vega]
ICGC DataPortalENSG00000254004
TCGA cBioPortalZNF260
AceView (NCBI)ZNF260
Genatlas (Paris)ZNF260
WikiGenes339324
SOURCE (Princeton)ZNF260
Genetics Home Reference (NIH)ZNF260
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF260  -     chr19:36510687-36528346 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF260  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF260 - 19q13.12 [CytoView hg19]  ZNF260 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF260 [Mapview hg19]  ZNF260 [Mapview hg38]
OMIM613749   
Gene and transcription
Genbank (Entrez)AK122854 AK123830 AK291442 BC042676 BC119003
RefSeq transcript (Entrez)NM_001012756 NM_001166036 NM_001166037 NM_001166038
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF260
Cluster EST : UnigeneHs.18103 [ NCBI ]
CGAP (NCI)Hs.18103
Alternative Splicing GalleryENSG00000254004
Gene ExpressionZNF260 [ NCBI-GEO ]   ZNF260 [ EBI - ARRAY_EXPRESS ]   ZNF260 [ SEEK ]   ZNF260 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF260 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339324
GTEX Portal (Tissue expression)ZNF260
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3ZCT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3ZCT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3ZCT1
Splice isoforms : SwissVarQ3ZCT1
PhosPhoSitePlusQ3ZCT1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF260
DMDM Disease mutations339324
Blocks (Seattle)ZNF260
SuperfamilyQ3ZCT1
Human Protein AtlasENSG00000254004
Peptide AtlasQ3ZCT1
HPRD18505
IPIIPI00243553   
Protein Interaction databases
DIP (DOE-UCLA)Q3ZCT1
IntAct (EBI)Q3ZCT1
FunCoupENSG00000254004
BioGRIDZNF260
STRING (EMBL)ZNF260
ZODIACZNF260
Ontologies - Pathways
QuickGOQ3ZCT1
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
NDEx NetworkZNF260
Atlas of Cancer Signalling NetworkZNF260
Wikipedia pathwaysZNF260
Orthology - Evolution
OrthoDB339324
GeneTree (enSembl)ENSG00000254004
Phylogenetic Trees/Animal Genes : TreeFamZNF260
HOVERGENQ3ZCT1
HOGENOMQ3ZCT1
Homologs : HomoloGeneZNF260
Homology/Alignments : Family Browser (UCSC)ZNF260
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF260 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF260
dbVarZNF260
ClinVarZNF260
1000_GenomesZNF260 
Exome Variant ServerZNF260
ExAC (Exome Aggregation Consortium)ZNF260 (select the gene name)
Genetic variants : HAPMAP339324
Genomic Variants (DGV)ZNF260 [DGVbeta]
DECIPHERZNF260 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF260 
Mutations
ICGC Data PortalZNF260 
TCGA Data PortalZNF260 
Broad Tumor PortalZNF260
OASIS PortalZNF260 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF260  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF260
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF260
DgiDB (Drug Gene Interaction Database)ZNF260
DoCM (Curated mutations)ZNF260 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF260 (select a term)
intoGenZNF260
Cancer3DZNF260(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613749   
Orphanet
MedgenZNF260
Genetic Testing Registry ZNF260
NextProtQ3ZCT1 [Medical]
TSGene339324
GENETestsZNF260
Target ValidationZNF260
Huge Navigator ZNF260 [HugePedia]
snp3D : Map Gene to Disease339324
BioCentury BCIQZNF260
ClinGenZNF260
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339324
Chemical/Pharm GKB GenePA145147548
Clinical trialZNF260
Miscellaneous
canSAR (ICR)ZNF260 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF260
EVEXZNF260
GoPubMedZNF260
iHOPZNF260
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:08 CEST 2017

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