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ZNF275 (zinc finger protein 275)

Identity

Other alias-
HGNC (Hugo) ZNF275
LocusID (NCBI) 10838
Atlas_Id 76067
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153334155 and ends at 153352926 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF275 (Xq28) / TEX28 (Xq28)ZNF275 (Xq28) / ZNF275 (Xq28)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF275   13069
Cards
Entrez_Gene (NCBI)ZNF275  10838  zinc finger protein 275
Aliases
GeneCards (Weizmann)ZNF275
Ensembl hg19 (Hinxton)ENSG00000063587 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000063587 [Gene_View]  chrX:153334155-153352926 [Contig_View]  ZNF275 [Vega]
ICGC DataPortalENSG00000063587
TCGA cBioPortalZNF275
AceView (NCBI)ZNF275
Genatlas (Paris)ZNF275
WikiGenes10838
SOURCE (Princeton)ZNF275
Genetics Home Reference (NIH)ZNF275
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF275  -     chrX:153334155-153352926 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF275  -     Xq28   [Description]    (hg19-Feb_2009)
EnsemblZNF275 - Xq28 [CytoView hg19]  ZNF275 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIZNF275 [Mapview hg19]  ZNF275 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122976 AK127133 AK172795 AL833683 BC001545
RefSeq transcript (Entrez)NM_001080485 NM_020636
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF275
Cluster EST : UnigeneHs.348963 [ NCBI ]
CGAP (NCI)Hs.348963
Alternative Splicing GalleryENSG00000063587
Gene ExpressionZNF275 [ NCBI-GEO ]   ZNF275 [ EBI - ARRAY_EXPRESS ]   ZNF275 [ SEEK ]   ZNF275 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF275 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10838
GTEX Portal (Tissue expression)ZNF275
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSD4
Splice isoforms : SwissVarQ9NSD4
PhosPhoSitePlusQ9NSD4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF275
DMDM Disease mutations10838
Blocks (Seattle)ZNF275
SuperfamilyQ9NSD4
Human Protein AtlasENSG00000063587
Peptide AtlasQ9NSD4
IPIIPI00943231   IPI00402618   IPI00645891   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSD4
IntAct (EBI)Q9NSD4
FunCoupENSG00000063587
BioGRIDZNF275
STRING (EMBL)ZNF275
ZODIACZNF275
Ontologies - Pathways
QuickGOQ9NSD4
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF275
Atlas of Cancer Signalling NetworkZNF275
Wikipedia pathwaysZNF275
Orthology - Evolution
OrthoDB10838
GeneTree (enSembl)ENSG00000063587
Phylogenetic Trees/Animal Genes : TreeFamZNF275
HOVERGENQ9NSD4
HOGENOMQ9NSD4
Homologs : HomoloGeneZNF275
Homology/Alignments : Family Browser (UCSC)ZNF275
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF275 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF275
dbVarZNF275
ClinVarZNF275
1000_GenomesZNF275 
Exome Variant ServerZNF275
ExAC (Exome Aggregation Consortium)ZNF275 (select the gene name)
Genetic variants : HAPMAP10838
Genomic Variants (DGV)ZNF275 [DGVbeta]
DECIPHERZNF275 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF275 
Mutations
ICGC Data PortalZNF275 
TCGA Data PortalZNF275 
Broad Tumor PortalZNF275
OASIS PortalZNF275 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF275  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF275
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZNF275
DgiDB (Drug Gene Interaction Database)ZNF275
DoCM (Curated mutations)ZNF275 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF275 (select a term)
intoGenZNF275
Cancer3DZNF275(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF275
Genetic Testing Registry ZNF275
NextProtQ9NSD4 [Medical]
TSGene10838
GENETestsZNF275
Target ValidationZNF275
Huge Navigator ZNF275 [HugePedia]
snp3D : Map Gene to Disease10838
BioCentury BCIQZNF275
ClinGenZNF275
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10838
Chemical/Pharm GKB GenePA37645
Clinical trialZNF275
Miscellaneous
canSAR (ICR)ZNF275 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF275
EVEXZNF275
GoPubMedZNF275
iHOPZNF275
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:09 CEST 2017

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