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ZNF277 (zinc finger protein 277)

Identity

Alias_namesZNF277P
zinc finger protein (C2H2 type) 277
zinc finger protein 277 pseudogene
Alias_symbol (synonym)NRIF4
Other alias
HGNC (Hugo) ZNF277
LocusID (NCBI) 11179
Atlas_Id 76069
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 112206588 and ends at 112343934 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF277 (7q31.1) / CEACAM19 (19q13.31)ZNF277 (7q31.1) / IFRD1 (7q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF277   13070
Cards
Entrez_Gene (NCBI)ZNF277  11179  zinc finger protein 277
AliasesNRIF4; ZNF277P
GeneCards (Weizmann)ZNF277
Ensembl hg19 (Hinxton)ENSG00000198839 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198839 [Gene_View]  chr7:112206588-112343934 [Contig_View]  ZNF277 [Vega]
ICGC DataPortalENSG00000198839
TCGA cBioPortalZNF277
AceView (NCBI)ZNF277
Genatlas (Paris)ZNF277
WikiGenes11179
SOURCE (Princeton)ZNF277
Genetics Home Reference (NIH)ZNF277
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF277  -     chr7:112206588-112343934 +  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF277  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblZNF277 - 7q31.1 [CytoView hg19]  ZNF277 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBIZNF277 [Mapview hg19]  ZNF277 [Mapview hg38]
OMIM605465   
Gene and transcription
Genbank (Entrez)AF209198 AF308819 AK027128 AK314630 AL713791
RefSeq transcript (Entrez)NM_021994
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF277
Cluster EST : UnigeneHs.655904 [ NCBI ]
CGAP (NCI)Hs.655904
Alternative Splicing GalleryENSG00000198839
Gene ExpressionZNF277 [ NCBI-GEO ]   ZNF277 [ EBI - ARRAY_EXPRESS ]   ZNF277 [ SEEK ]   ZNF277 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF277 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11179
GTEX Portal (Tissue expression)ZNF277
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NRM2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NRM2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NRM2
Splice isoforms : SwissVarQ9NRM2
PhosPhoSitePlusQ9NRM2
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)zf-C2H2_2 (PF12756)   
Domain families : Pfam (NCBI)pfam12756   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF277
DMDM Disease mutations11179
Blocks (Seattle)ZNF277
SuperfamilyQ9NRM2
Human Protein AtlasENSG00000198839
Peptide AtlasQ9NRM2
HPRD05680
IPIIPI00465033   IPI00926026   IPI00747644   IPI00925588   IPI00925340   IPI00925135   IPI00924898   
Protein Interaction databases
DIP (DOE-UCLA)Q9NRM2
IntAct (EBI)Q9NRM2
FunCoupENSG00000198839
BioGRIDZNF277
STRING (EMBL)ZNF277
ZODIACZNF277
Ontologies - Pathways
QuickGOQ9NRM2
Ontology : AmiGORNA polymerase II core promoter sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  cellular response to hydrogen peroxide  regulation of cellular senescence  
Ontology : EGO-EBIRNA polymerase II core promoter sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  cellular response to hydrogen peroxide  regulation of cellular senescence  
NDEx NetworkZNF277
Atlas of Cancer Signalling NetworkZNF277
Wikipedia pathwaysZNF277
Orthology - Evolution
OrthoDB11179
GeneTree (enSembl)ENSG00000198839
Phylogenetic Trees/Animal Genes : TreeFamZNF277
HOVERGENQ9NRM2
HOGENOMQ9NRM2
Homologs : HomoloGeneZNF277
Homology/Alignments : Family Browser (UCSC)ZNF277
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF277 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF277
dbVarZNF277
ClinVarZNF277
1000_GenomesZNF277 
Exome Variant ServerZNF277
ExAC (Exome Aggregation Consortium)ZNF277 (select the gene name)
Genetic variants : HAPMAP11179
Genomic Variants (DGV)ZNF277 [DGVbeta]
DECIPHERZNF277 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF277 
Mutations
ICGC Data PortalZNF277 
TCGA Data PortalZNF277 
Broad Tumor PortalZNF277
OASIS PortalZNF277 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF277  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF277
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF277
DgiDB (Drug Gene Interaction Database)ZNF277
DoCM (Curated mutations)ZNF277 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF277 (select a term)
intoGenZNF277
Cancer3DZNF277(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605465   
Orphanet
MedgenZNF277
Genetic Testing Registry ZNF277
NextProtQ9NRM2 [Medical]
TSGene11179
GENETestsZNF277
Target ValidationZNF277
Huge Navigator ZNF277 [HugePedia]
snp3D : Map Gene to Disease11179
BioCentury BCIQZNF277
ClinGenZNF277
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11179
Chemical/Pharm GKB GenePA37646
Clinical trialZNF277
Miscellaneous
canSAR (ICR)ZNF277 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF277
EVEXZNF277
GoPubMedZNF277
iHOPZNF277
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:34 CEST 2017

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