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ZNF28 (zinc finger protein 28)

Identity

Alias_nameszinc finger protein 28 (KOX 24)
Alias_symbol (synonym)KOX24
DKFZp781D0275
Other alias
HGNC (Hugo) ZNF28
LocusID (NCBI) 7576
Atlas_Id 76070
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 52797408 and ends at 52821669 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF28 (19q13.41) / CPSF6 (12q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF28   13073
Cards
Entrez_Gene (NCBI)ZNF28  7576  zinc finger protein 28
AliasesKOX24
GeneCards (Weizmann)ZNF28
Ensembl hg19 (Hinxton)ENSG00000198538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198538 [Gene_View]  chr19:52797408-52821669 [Contig_View]  ZNF28 [Vega]
ICGC DataPortalENSG00000198538
TCGA cBioPortalZNF28
AceView (NCBI)ZNF28
Genatlas (Paris)ZNF28
WikiGenes7576
SOURCE (Princeton)ZNF28
Genetics Home Reference (NIH)ZNF28
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF28  -     chr19:52797408-52821669 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF28  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF28 - 19q13.41 [CytoView hg19]  ZNF28 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF28 [Mapview hg19]  ZNF28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091553 AK092385 AK131368 AK131574 AK293074
RefSeq transcript (Entrez)NM_006969
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF28
Cluster EST : UnigeneHs.732407 [ NCBI ]
CGAP (NCI)Hs.732407
Alternative Splicing GalleryENSG00000198538
Gene ExpressionZNF28 [ NCBI-GEO ]   ZNF28 [ EBI - ARRAY_EXPRESS ]   ZNF28 [ SEEK ]   ZNF28 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7576
GTEX Portal (Tissue expression)ZNF28
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17035   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17035  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17035
Splice isoforms : SwissVarP17035
PhosPhoSitePlusP17035
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF28
DMDM Disease mutations7576
Blocks (Seattle)ZNF28
SuperfamilyP17035
Human Protein AtlasENSG00000198538
Peptide AtlasP17035
HPRD18507
IPIIPI01014655   IPI00640476   IPI00916386   IPI00902697   
Protein Interaction databases
DIP (DOE-UCLA)P17035
IntAct (EBI)P17035
FunCoupENSG00000198538
BioGRIDZNF28
STRING (EMBL)ZNF28
ZODIACZNF28
Ontologies - Pathways
QuickGOP17035
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF28
Atlas of Cancer Signalling NetworkZNF28
Wikipedia pathwaysZNF28
Orthology - Evolution
OrthoDB7576
GeneTree (enSembl)ENSG00000198538
Phylogenetic Trees/Animal Genes : TreeFamZNF28
HOVERGENP17035
HOGENOMP17035
Homologs : HomoloGeneZNF28
Homology/Alignments : Family Browser (UCSC)ZNF28
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF28
dbVarZNF28
ClinVarZNF28
1000_GenomesZNF28 
Exome Variant ServerZNF28
ExAC (Exome Aggregation Consortium)ZNF28 (select the gene name)
Genetic variants : HAPMAP7576
Genomic Variants (DGV)ZNF28 [DGVbeta]
DECIPHERZNF28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF28 
Mutations
ICGC Data PortalZNF28 
TCGA Data PortalZNF28 
Broad Tumor PortalZNF28
OASIS PortalZNF28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF28
DgiDB (Drug Gene Interaction Database)ZNF28
DoCM (Curated mutations)ZNF28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF28 (select a term)
intoGenZNF28
Cancer3DZNF28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF28
Genetic Testing Registry ZNF28
NextProtP17035 [Medical]
TSGene7576
GENETestsZNF28
Target ValidationZNF28
Huge Navigator ZNF28 [HugePedia]
snp3D : Map Gene to Disease7576
BioCentury BCIQZNF28
ClinGenZNF28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7576
Chemical/Pharm GKB GenePA37649
Clinical trialZNF28
Miscellaneous
canSAR (ICR)ZNF28 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF28
EVEXZNF28
GoPubMedZNF28
iHOPZNF28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:10 CEST 2017

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