Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF280A (zinc finger protein 280A)

Identity

Alias_namesZNF280
SUHW1
zinc finger protein 280
suppressor of hairy wing homolog 1 (Drosophila)
Alias_symbol (synonym)3'OY11.1
ZNF636
Other alias
HGNC (Hugo) ZNF280A
LocusID (NCBI) 129025
Atlas_Id 76071
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 22513736 and ends at 22520281 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF280A   18597
Cards
Entrez_Gene (NCBI)ZNF280A  129025  zinc finger protein 280A
Aliases3'OY11.1; SUHW1; ZNF280; ZNF636
GeneCards (Weizmann)ZNF280A
Ensembl hg19 (Hinxton)ENSG00000169548 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169548 [Gene_View]  chr22:22513736-22520281 [Contig_View]  ZNF280A [Vega]
ICGC DataPortalENSG00000169548
TCGA cBioPortalZNF280A
AceView (NCBI)ZNF280A
Genatlas (Paris)ZNF280A
WikiGenes129025
SOURCE (Princeton)ZNF280A
Genetics Home Reference (NIH)ZNF280A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF280A  -     chr22:22513736-22520281 -  22q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF280A  -     22q11.22   [Description]    (hg19-Feb_2009)
EnsemblZNF280A - 22q11.22 [CytoView hg19]  ZNF280A - 22q11.22 [CytoView hg38]
Mapping of homologs : NCBIZNF280A [Mapview hg19]  ZNF280A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093108 BC053901 BG473533 BP283207 HQ258003
RefSeq transcript (Entrez)NM_080740
RefSeq genomic (Entrez)NC_000022 NC_018933 NG_000002 NT_187629
Consensus coding sequences : CCDS (NCBI)ZNF280A
Cluster EST : UnigeneHs.178665 [ NCBI ]
CGAP (NCI)Hs.178665
Alternative Splicing GalleryENSG00000169548
Gene ExpressionZNF280A [ NCBI-GEO ]   ZNF280A [ EBI - ARRAY_EXPRESS ]   ZNF280A [ SEEK ]   ZNF280A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF280A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)129025
GTEX Portal (Tissue expression)ZNF280A
Human Protein AtlasENSG00000169548-ZNF280A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59817   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59817  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59817
Splice isoforms : SwissVarP59817
PhosPhoSitePlusP59817
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)DUF4195    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)DUF4195 (PF13836)   
Domain families : Pfam (NCBI)pfam13836   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF280A
DMDM Disease mutations129025
Blocks (Seattle)ZNF280A
SuperfamilyP59817
Human Protein Atlas [tissue]ENSG00000169548-ZNF280A [tissue]
Peptide AtlasP59817
HPRD18129
IPIIPI00337769   
Protein Interaction databases
DIP (DOE-UCLA)P59817
IntAct (EBI)P59817
FunCoupENSG00000169548
BioGRIDZNF280A
STRING (EMBL)ZNF280A
ZODIACZNF280A
Ontologies - Pathways
QuickGOP59817
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF280A
Atlas of Cancer Signalling NetworkZNF280A
Wikipedia pathwaysZNF280A
Orthology - Evolution
OrthoDB129025
GeneTree (enSembl)ENSG00000169548
Phylogenetic Trees/Animal Genes : TreeFamZNF280A
HOVERGENP59817
HOGENOMP59817
Homologs : HomoloGeneZNF280A
Homology/Alignments : Family Browser (UCSC)ZNF280A
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF280A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF280A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF280A
dbVarZNF280A
ClinVarZNF280A
1000_GenomesZNF280A 
Exome Variant ServerZNF280A
ExAC (Exome Aggregation Consortium)ENSG00000169548
GNOMAD BrowserENSG00000169548
Genetic variants : HAPMAP129025
Genomic Variants (DGV)ZNF280A [DGVbeta]
DECIPHERZNF280A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF280A 
Mutations
ICGC Data PortalZNF280A 
TCGA Data PortalZNF280A 
Broad Tumor PortalZNF280A
OASIS PortalZNF280A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF280A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF280A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF280A
DgiDB (Drug Gene Interaction Database)ZNF280A
DoCM (Curated mutations)ZNF280A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF280A (select a term)
intoGenZNF280A
Cancer3DZNF280A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF280A
Genetic Testing Registry ZNF280A
NextProtP59817 [Medical]
TSGene129025
GENETestsZNF280A
Target ValidationZNF280A
Huge Navigator ZNF280A [HugePedia]
snp3D : Map Gene to Disease129025
BioCentury BCIQZNF280A
ClinGenZNF280A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129025
Chemical/Pharm GKB GenePA38358
Clinical trialZNF280A
Miscellaneous
canSAR (ICR)ZNF280A (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF280A
EVEXZNF280A
GoPubMedZNF280A
iHOPZNF280A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:36:51 CET 2017

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