Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF280B (zinc finger protein 280B)

Identity

Alias_namesZNF279
SUHW2
zinc finger protein 279
suppressor of hairy wing homolog 2 (Drosophila)
Alias_symbol (synonym)5'OY11.1
ZNF632
Other aliasD87009.C22.3
HGNC (Hugo) ZNF280B
LocusID (NCBI) 140883
Atlas_Id 54857
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 22484426 and ends at 22509187 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF280B   23022
Cards
Entrez_Gene (NCBI)ZNF280B  140883  zinc finger protein 280B
Aliases5'OY11.1; D87009.C22.3; SUHW2; ZNF279; 
ZNF632
GeneCards (Weizmann)ZNF280B
Ensembl hg19 (Hinxton)ENSG00000275004 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275004 [Gene_View]  chr22:22484426-22509187 [Contig_View]  ZNF280B [Vega]
ICGC DataPortalENSG00000275004
TCGA cBioPortalZNF280B
AceView (NCBI)ZNF280B
Genatlas (Paris)ZNF280B
WikiGenes140883
SOURCE (Princeton)ZNF280B
Genetics Home Reference (NIH)ZNF280B
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF280B  -     chr22:22484426-22509187 -  22q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF280B  -     22q11.22   [Description]    (hg19-Feb_2009)
EnsemblZNF280B - 22q11.22 [CytoView hg19]  ZNF280B - 22q11.22 [CytoView hg38]
Mapping of homologs : NCBIZNF280B [Mapview hg19]  ZNF280B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097608 AW021601 BC035376 BC040020 BC042370
RefSeq transcript (Entrez)NM_080764
RefSeq genomic (Entrez)NC_000022 NC_018933 NG_000002 NT_187629
Consensus coding sequences : CCDS (NCBI)ZNF280B
Cluster EST : UnigeneHs.43834 [ NCBI ]
CGAP (NCI)Hs.43834
Alternative Splicing GalleryENSG00000275004
Gene ExpressionZNF280B [ NCBI-GEO ]   ZNF280B [ EBI - ARRAY_EXPRESS ]   ZNF280B [ SEEK ]   ZNF280B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF280B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140883
GTEX Portal (Tissue expression)ZNF280B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YH2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YH2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YH2
Splice isoforms : SwissVarQ86YH2
PhosPhoSitePlusQ86YH2
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)DUF4195    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)DUF4195 (PF13836)   
Domain families : Pfam (NCBI)pfam13836   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF280B
DMDM Disease mutations140883
Blocks (Seattle)ZNF280B
SuperfamilyQ86YH2
Human Protein AtlasENSG00000275004
Peptide AtlasQ86YH2
HPRD11615
IPIIPI00329383   
Protein Interaction databases
DIP (DOE-UCLA)Q86YH2
IntAct (EBI)Q86YH2
FunCoupENSG00000275004
BioGRIDZNF280B
STRING (EMBL)ZNF280B
ZODIACZNF280B
Ontologies - Pathways
QuickGOQ86YH2
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF280B
Atlas of Cancer Signalling NetworkZNF280B
Wikipedia pathwaysZNF280B
Orthology - Evolution
OrthoDB140883
GeneTree (enSembl)ENSG00000275004
Phylogenetic Trees/Animal Genes : TreeFamZNF280B
HOVERGENQ86YH2
HOGENOMQ86YH2
Homologs : HomoloGeneZNF280B
Homology/Alignments : Family Browser (UCSC)ZNF280B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF280B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF280B
dbVarZNF280B
ClinVarZNF280B
1000_GenomesZNF280B 
Exome Variant ServerZNF280B
ExAC (Exome Aggregation Consortium)ZNF280B (select the gene name)
Genetic variants : HAPMAP140883
Genomic Variants (DGV)ZNF280B [DGVbeta]
DECIPHERZNF280B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF280B 
Mutations
ICGC Data PortalZNF280B 
TCGA Data PortalZNF280B 
Broad Tumor PortalZNF280B
OASIS PortalZNF280B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF280B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF280B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF280B
DgiDB (Drug Gene Interaction Database)ZNF280B
DoCM (Curated mutations)ZNF280B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF280B (select a term)
intoGenZNF280B
Cancer3DZNF280B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF280B
Genetic Testing Registry ZNF280B
NextProtQ86YH2 [Medical]
TSGene140883
GENETestsZNF280B
Target ValidationZNF280B
Huge Navigator ZNF280B [HugePedia]
snp3D : Map Gene to Disease140883
BioCentury BCIQZNF280B
ClinGenZNF280B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140883
Chemical/Pharm GKB GenePA162409948
Clinical trialZNF280B
Miscellaneous
canSAR (ICR)ZNF280B (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF280B
EVEXZNF280B
GoPubMedZNF280B
iHOPZNF280B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:42 CEST 2017

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