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ZNF280C (zinc finger protein 280C)

Identity

Alias_namesSUHW3
suppressor of hairy wing homolog 3 (Drosophila)
Alias_symbol (synonym)FLJ20095
ZNF633
Other alias
HGNC (Hugo) ZNF280C
LocusID (NCBI) 55609
Atlas_Id 76072
Location Xq26.1  [Link to chromosome band Xq26]
Location_base_pair Starts at 130202699 and ends at 130268948 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NUP153 (6p22.3) / ZNF280C (Xq26.1)ZNF280C (Xq26.1) / ZNF331 (19q13.42)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF280C   25955
Cards
Entrez_Gene (NCBI)ZNF280C  55609  zinc finger protein 280C
AliasesSUHW3; ZNF633
GeneCards (Weizmann)ZNF280C
Ensembl hg19 (Hinxton)ENSG00000056277 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000056277 [Gene_View]  chrX:130202699-130268948 [Contig_View]  ZNF280C [Vega]
ICGC DataPortalENSG00000056277
TCGA cBioPortalZNF280C
AceView (NCBI)ZNF280C
Genatlas (Paris)ZNF280C
WikiGenes55609
SOURCE (Princeton)ZNF280C
Genetics Home Reference (NIH)ZNF280C
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF280C  -     chrX:130202699-130268948 -  Xq26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF280C  -     Xq26.1   [Description]    (hg19-Feb_2009)
EnsemblZNF280C - Xq26.1 [CytoView hg19]  ZNF280C - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIZNF280C [Mapview hg19]  ZNF280C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA805654 AK000102 AK290373 AL133204 AL834333
RefSeq transcript (Entrez)NM_017666
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF280C
Cluster EST : UnigeneHs.308418 [ NCBI ]
CGAP (NCI)Hs.308418
Alternative Splicing GalleryENSG00000056277
Gene ExpressionZNF280C [ NCBI-GEO ]   ZNF280C [ EBI - ARRAY_EXPRESS ]   ZNF280C [ SEEK ]   ZNF280C [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF280C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55609
GTEX Portal (Tissue expression)ZNF280C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8ND82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8ND82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8ND82
Splice isoforms : SwissVarQ8ND82
PhosPhoSitePlusQ8ND82
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)DUF4195    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)DUF4195 (PF13836)   
Domain families : Pfam (NCBI)pfam13836   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF280C
DMDM Disease mutations55609
Blocks (Seattle)ZNF280C
SuperfamilyQ8ND82
Human Protein AtlasENSG00000056277
Peptide AtlasQ8ND82
HPRD06526
IPIIPI00183642   IPI00006892   
Protein Interaction databases
DIP (DOE-UCLA)Q8ND82
IntAct (EBI)Q8ND82
FunCoupENSG00000056277
BioGRIDZNF280C
STRING (EMBL)ZNF280C
ZODIACZNF280C
Ontologies - Pathways
QuickGOQ8ND82
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF280C
Atlas of Cancer Signalling NetworkZNF280C
Wikipedia pathwaysZNF280C
Orthology - Evolution
OrthoDB55609
GeneTree (enSembl)ENSG00000056277
Phylogenetic Trees/Animal Genes : TreeFamZNF280C
HOVERGENQ8ND82
HOGENOMQ8ND82
Homologs : HomoloGeneZNF280C
Homology/Alignments : Family Browser (UCSC)ZNF280C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF280C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF280C
dbVarZNF280C
ClinVarZNF280C
1000_GenomesZNF280C 
Exome Variant ServerZNF280C
ExAC (Exome Aggregation Consortium)ZNF280C (select the gene name)
Genetic variants : HAPMAP55609
Genomic Variants (DGV)ZNF280C [DGVbeta]
DECIPHERZNF280C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF280C 
Mutations
ICGC Data PortalZNF280C 
TCGA Data PortalZNF280C 
Broad Tumor PortalZNF280C
OASIS PortalZNF280C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF280C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF280C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZNF280C
DgiDB (Drug Gene Interaction Database)ZNF280C
DoCM (Curated mutations)ZNF280C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF280C (select a term)
intoGenZNF280C
Cancer3DZNF280C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF280C
Genetic Testing Registry ZNF280C
NextProtQ8ND82 [Medical]
TSGene55609
GENETestsZNF280C
Target ValidationZNF280C
Huge Navigator ZNF280C [HugePedia]
snp3D : Map Gene to Disease55609
BioCentury BCIQZNF280C
ClinGenZNF280C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55609
Chemical/Pharm GKB GenePA162409961
Clinical trialZNF280C
Miscellaneous
canSAR (ICR)ZNF280C (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF280C
EVEXZNF280C
GoPubMedZNF280C
iHOPZNF280C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:10 CEST 2017

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