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ZNF280D (zinc finger protein 280D)

Identity

Alias_namesSUHW4
suppressor of hairy wing homolog 4 (Drosophila)
Alias_symbol (synonym)FLJ20086
ZNF634
Other alias
HGNC (Hugo) ZNF280D
LocusID (NCBI) 54816
Atlas_Id 52273
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 56630176 and ends at 56734086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EMG1 (12p13.31) / ZNF280D (15q21.3)LOC729737 (1p36.33) / ZNF280D (15q21.3)ZNF280D (15q21.3) / RNF111 (15q22.1)
ZNF280D (15q21.3) / ZNF280D (15q21.3)ZNF280D 15q21.3 / RNF111 15q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF280D   25953
Cards
Entrez_Gene (NCBI)ZNF280D  54816  zinc finger protein 280D
AliasesSUHW4; ZNF634
GeneCards (Weizmann)ZNF280D
Ensembl hg19 (Hinxton)ENSG00000137871 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137871 [Gene_View]  chr15:56630176-56734086 [Contig_View]  ZNF280D [Vega]
ICGC DataPortalENSG00000137871
TCGA cBioPortalZNF280D
AceView (NCBI)ZNF280D
Genatlas (Paris)ZNF280D
WikiGenes54816
SOURCE (Princeton)ZNF280D
Genetics Home Reference (NIH)ZNF280D
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF280D  -     chr15:56630176-56734086 -  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF280D  -     15q21.3   [Description]    (hg19-Feb_2009)
EnsemblZNF280D - 15q21.3 [CytoView hg19]  ZNF280D - 15q21.3 [CytoView hg38]
Mapping of homologs : NCBIZNF280D [Mapview hg19]  ZNF280D [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB046804 AK000093 AK025073 AK289739 AK295159
RefSeq transcript (Entrez)NM_001002843 NM_001002844 NM_001288588 NM_001288589 NM_017661
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF280D
Cluster EST : UnigeneHs.511477 [ NCBI ]
CGAP (NCI)Hs.511477
Alternative Splicing GalleryENSG00000137871
Gene ExpressionZNF280D [ NCBI-GEO ]   ZNF280D [ EBI - ARRAY_EXPRESS ]   ZNF280D [ SEEK ]   ZNF280D [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF280D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54816
GTEX Portal (Tissue expression)ZNF280D
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6N043   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6N043  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6N043
Splice isoforms : SwissVarQ6N043
PhosPhoSitePlusQ6N043
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)DUF4195    Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)DUF4195 (PF13836)   
Domain families : Pfam (NCBI)pfam13836   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF280D
DMDM Disease mutations54816
Blocks (Seattle)ZNF280D
SuperfamilyQ6N043
Human Protein AtlasENSG00000137871
Peptide AtlasQ6N043
HPRD15448
IPIIPI00921024   IPI00921457   IPI00335065   IPI00457232   IPI00149044   IPI00792669   IPI00440240   
Protein Interaction databases
DIP (DOE-UCLA)Q6N043
IntAct (EBI)Q6N043
FunCoupENSG00000137871
BioGRIDZNF280D
STRING (EMBL)ZNF280D
ZODIACZNF280D
Ontologies - Pathways
QuickGOQ6N043
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF280D
Atlas of Cancer Signalling NetworkZNF280D
Wikipedia pathwaysZNF280D
Orthology - Evolution
OrthoDB54816
GeneTree (enSembl)ENSG00000137871
Phylogenetic Trees/Animal Genes : TreeFamZNF280D
HOVERGENQ6N043
HOGENOMQ6N043
Homologs : HomoloGeneZNF280D
Homology/Alignments : Family Browser (UCSC)ZNF280D
Gene fusions - Rearrangements
Fusion : MitelmanZNF280D/RNF111 [15q21.3/15q22.1]  
Fusion: TCGAZNF280D 15q21.3 RNF111 15q22.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF280D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF280D
dbVarZNF280D
ClinVarZNF280D
1000_GenomesZNF280D 
Exome Variant ServerZNF280D
ExAC (Exome Aggregation Consortium)ZNF280D (select the gene name)
Genetic variants : HAPMAP54816
Genomic Variants (DGV)ZNF280D [DGVbeta]
DECIPHERZNF280D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF280D 
Mutations
ICGC Data PortalZNF280D 
TCGA Data PortalZNF280D 
Broad Tumor PortalZNF280D
OASIS PortalZNF280D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF280D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF280D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF280D
DgiDB (Drug Gene Interaction Database)ZNF280D
DoCM (Curated mutations)ZNF280D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF280D (select a term)
intoGenZNF280D
Cancer3DZNF280D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF280D
Genetic Testing Registry ZNF280D
NextProtQ6N043 [Medical]
TSGene54816
GENETestsZNF280D
Target ValidationZNF280D
Huge Navigator ZNF280D [HugePedia]
snp3D : Map Gene to Disease54816
BioCentury BCIQZNF280D
ClinGenZNF280D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54816
Chemical/Pharm GKB GenePA162410004
Clinical trialZNF280D
Miscellaneous
canSAR (ICR)ZNF280D (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF280D
EVEXZNF280D
GoPubMedZNF280D
iHOPZNF280D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:19:26 CEST 2017

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