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ZNF282 (zinc finger protein 282)

Identity

Alias_symbol (synonym)HUB1
Other alias
HGNC (Hugo) ZNF282
LocusID (NCBI) 8427
Atlas_Id 53616
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 149195462 and ends at 149226248 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF276 (16q24.3) / ZNF282 (7q36.1)ZNF282 (7q36.1) / CUL1 (7q36.1)ZNF282 7q36.1 / CUL1 7q36.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF282   13076
Cards
Entrez_Gene (NCBI)ZNF282  8427  zinc finger protein 282
AliasesHUB1
GeneCards (Weizmann)ZNF282
Ensembl hg19 (Hinxton)ENSG00000170265 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170265 [Gene_View]  chr7:149195462-149226248 [Contig_View]  ZNF282 [Vega]
ICGC DataPortalENSG00000170265
TCGA cBioPortalZNF282
AceView (NCBI)ZNF282
Genatlas (Paris)ZNF282
WikiGenes8427
SOURCE (Princeton)ZNF282
Genetics Home Reference (NIH)ZNF282
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF282  -     chr7:149195462-149226248 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF282  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblZNF282 - 7q36.1 [CytoView hg19]  ZNF282 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIZNF282 [Mapview hg19]  ZNF282 [Mapview hg38]
OMIM603397   
Gene and transcription
Genbank (Entrez)AK299280 AK316282 AY927504 AY927505 BC009542
RefSeq transcript (Entrez)NM_001303481 NM_003575
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF282
Cluster EST : UnigeneHs.729056 [ NCBI ]
CGAP (NCI)Hs.729056
Alternative Splicing GalleryENSG00000170265
Gene ExpressionZNF282 [ NCBI-GEO ]   ZNF282 [ EBI - ARRAY_EXPRESS ]   ZNF282 [ SEEK ]   ZNF282 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF282 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8427
GTEX Portal (Tissue expression)ZNF282
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UDV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UDV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UDV7
Splice isoforms : SwissVarQ9UDV7
PhosPhoSitePlusQ9UDV7
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)DUF3669_Znf    KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)DUF3669 (PF12417)    KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam12417    pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF282
DMDM Disease mutations8427
Blocks (Seattle)ZNF282
SuperfamilyQ9UDV7
Human Protein AtlasENSG00000170265
Peptide AtlasQ9UDV7
HPRD04549
IPIIPI00003798   IPI00807546   IPI00944910   
Protein Interaction databases
DIP (DOE-UCLA)Q9UDV7
IntAct (EBI)Q9UDV7
FunCoupENSG00000170265
BioGRIDZNF282
STRING (EMBL)ZNF282
ZODIACZNF282
Ontologies - Pathways
QuickGOQ9UDV7
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  negative regulation of transcription, DNA-templated  
NDEx NetworkZNF282
Atlas of Cancer Signalling NetworkZNF282
Wikipedia pathwaysZNF282
Orthology - Evolution
OrthoDB8427
GeneTree (enSembl)ENSG00000170265
Phylogenetic Trees/Animal Genes : TreeFamZNF282
HOVERGENQ9UDV7
HOGENOMQ9UDV7
Homologs : HomoloGeneZNF282
Homology/Alignments : Family Browser (UCSC)ZNF282
Gene fusions - Rearrangements
Fusion : MitelmanZNF282/CUL1 [7q36.1/7q36.1]  
Fusion: TCGAZNF282 7q36.1 CUL1 7q36.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF282 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF282
dbVarZNF282
ClinVarZNF282
1000_GenomesZNF282 
Exome Variant ServerZNF282
ExAC (Exome Aggregation Consortium)ZNF282 (select the gene name)
Genetic variants : HAPMAP8427
Genomic Variants (DGV)ZNF282 [DGVbeta]
DECIPHERZNF282 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF282 
Mutations
ICGC Data PortalZNF282 
TCGA Data PortalZNF282 
Broad Tumor PortalZNF282
OASIS PortalZNF282 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF282  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF282
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF282
DgiDB (Drug Gene Interaction Database)ZNF282
DoCM (Curated mutations)ZNF282 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF282 (select a term)
intoGenZNF282
Cancer3DZNF282(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603397   
Orphanet
MedgenZNF282
Genetic Testing Registry ZNF282
NextProtQ9UDV7 [Medical]
TSGene8427
GENETestsZNF282
Target ValidationZNF282
Huge Navigator ZNF282 [HugePedia]
snp3D : Map Gene to Disease8427
BioCentury BCIQZNF282
ClinGenZNF282
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8427
Chemical/Pharm GKB GenePA37652
Clinical trialZNF282
Miscellaneous
canSAR (ICR)ZNF282 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF282
EVEXZNF282
GoPubMedZNF282
iHOPZNF282
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:19:27 CEST 2017

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