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ZNF283 (zinc finger protein 283)

Identity

Other aliasHZF19
HZF41
HGNC (Hugo) ZNF283
LocusID (NCBI) 284349
Atlas_Id 76073
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43827292 and ends at 43848898 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF283 (19q13.31) / NDUFAF2 (5q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF283   13077
Cards
Entrez_Gene (NCBI)ZNF283  284349  zinc finger protein 283
AliasesHZF19; HZF41
GeneCards (Weizmann)ZNF283
Ensembl hg19 (Hinxton)ENSG00000167637 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167637 [Gene_View]  chr19:43827292-43848898 [Contig_View]  ZNF283 [Vega]
ICGC DataPortalENSG00000167637
TCGA cBioPortalZNF283
AceView (NCBI)ZNF283
Genatlas (Paris)ZNF283
WikiGenes284349
SOURCE (Princeton)ZNF283
Genetics Home Reference (NIH)ZNF283
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF283  -     chr19:43827292-43848898 +  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF283  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF283 - 19q13.31 [CytoView hg19]  ZNF283 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF283 [Mapview hg19]  ZNF283 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI753038 AK098175 AK294852 AY166784 AY500359
RefSeq transcript (Entrez)NM_001297752 NM_181845
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF283
Cluster EST : UnigeneHs.652513 [ NCBI ]
CGAP (NCI)Hs.652513
Alternative Splicing GalleryENSG00000167637
Gene ExpressionZNF283 [ NCBI-GEO ]   ZNF283 [ EBI - ARRAY_EXPRESS ]   ZNF283 [ SEEK ]   ZNF283 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF283 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284349
GTEX Portal (Tissue expression)ZNF283
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7M2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7M2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7M2
Splice isoforms : SwissVarQ8N7M2
PhosPhoSitePlusQ8N7M2
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF283
DMDM Disease mutations284349
Blocks (Seattle)ZNF283
SuperfamilyQ8N7M2
Human Protein AtlasENSG00000167637
Peptide AtlasQ8N7M2
IPIIPI00791390   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7M2
IntAct (EBI)Q8N7M2
FunCoupENSG00000167637
BioGRIDZNF283
STRING (EMBL)ZNF283
ZODIACZNF283
Ontologies - Pathways
QuickGOQ8N7M2
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF283
Atlas of Cancer Signalling NetworkZNF283
Wikipedia pathwaysZNF283
Orthology - Evolution
OrthoDB284349
GeneTree (enSembl)ENSG00000167637
Phylogenetic Trees/Animal Genes : TreeFamZNF283
HOVERGENQ8N7M2
HOGENOMQ8N7M2
Homologs : HomoloGeneZNF283
Homology/Alignments : Family Browser (UCSC)ZNF283
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF283 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF283
dbVarZNF283
ClinVarZNF283
1000_GenomesZNF283 
Exome Variant ServerZNF283
ExAC (Exome Aggregation Consortium)ZNF283 (select the gene name)
Genetic variants : HAPMAP284349
Genomic Variants (DGV)ZNF283 [DGVbeta]
DECIPHERZNF283 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF283 
Mutations
ICGC Data PortalZNF283 
TCGA Data PortalZNF283 
Broad Tumor PortalZNF283
OASIS PortalZNF283 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF283  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF283
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF283
DgiDB (Drug Gene Interaction Database)ZNF283
DoCM (Curated mutations)ZNF283 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF283 (select a term)
intoGenZNF283
Cancer3DZNF283(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF283
Genetic Testing Registry ZNF283
NextProtQ8N7M2 [Medical]
TSGene284349
GENETestsZNF283
Target ValidationZNF283
Huge Navigator ZNF283 [HugePedia]
snp3D : Map Gene to Disease284349
BioCentury BCIQZNF283
ClinGenZNF283
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284349
Chemical/Pharm GKB GenePA37653
Clinical trialZNF283
Miscellaneous
canSAR (ICR)ZNF283 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF283
EVEXZNF283
GoPubMedZNF283
iHOPZNF283
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:10 CEST 2017

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