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ZNF285 (zinc finger protein 285)

Identity

Alias_namesZNF285A
zinc finger protein 285A
Other alias
HGNC (Hugo) ZNF285
LocusID (NCBI) 26974
Atlas_Id 76075
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 44385646 and ends at 44401611 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPR39 (2q21.2) / ZNF285 (19q13.31)HLA-DQA1 (6p21.32) / ZNF285 (19q13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF285   13079
Cards
Entrez_Gene (NCBI)ZNF285  26974  zinc finger protein 285
AliasesZNF285A
GeneCards (Weizmann)ZNF285
Ensembl hg19 (Hinxton)ENSG00000267508 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267508 [Gene_View]  chr19:44385646-44401611 [Contig_View]  ZNF285 [Vega]
ICGC DataPortalENSG00000267508
TCGA cBioPortalZNF285
AceView (NCBI)ZNF285
Genatlas (Paris)ZNF285
WikiGenes26974
SOURCE (Princeton)ZNF285
Genetics Home Reference (NIH)ZNF285
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF285  -     chr19:44385646-44401611 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF285  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF285 - 19q13.31 [CytoView hg19]  ZNF285 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF285 [Mapview hg19]  ZNF285 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055309 AL833447 AY166790 BC069384 BC074824
RefSeq transcript (Entrez)NM_001291488 NM_001291489 NM_001291490 NM_001291491 NM_152354
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF285
Cluster EST : UnigeneHs.709428 [ NCBI ]
CGAP (NCI)Hs.709428
Alternative Splicing GalleryENSG00000267508
Gene ExpressionZNF285 [ NCBI-GEO ]   ZNF285 [ EBI - ARRAY_EXPRESS ]   ZNF285 [ SEEK ]   ZNF285 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF285 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26974
GTEX Portal (Tissue expression)ZNF285
Human Protein AtlasENSG00000267508-ZNF285 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NJ3
Splice isoforms : SwissVarQ96NJ3
PhosPhoSitePlusQ96NJ3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF285
DMDM Disease mutations26974
Blocks (Seattle)ZNF285
SuperfamilyQ96NJ3
Human Protein Atlas [tissue]ENSG00000267508-ZNF285 [tissue]
Peptide AtlasQ96NJ3
HPRD15759
IPIIPI00930299   IPI00930576   IPI01015713   IPI01015296   IPI00873052   IPI01015338   
Protein Interaction databases
DIP (DOE-UCLA)Q96NJ3
IntAct (EBI)Q96NJ3
FunCoupENSG00000267508
BioGRIDZNF285
STRING (EMBL)ZNF285
ZODIACZNF285
Ontologies - Pathways
QuickGOQ96NJ3
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF285
Atlas of Cancer Signalling NetworkZNF285
Wikipedia pathwaysZNF285
Orthology - Evolution
OrthoDB26974
GeneTree (enSembl)ENSG00000267508
Phylogenetic Trees/Animal Genes : TreeFamZNF285
HOVERGENQ96NJ3
HOGENOMQ96NJ3
Homologs : HomoloGeneZNF285
Homology/Alignments : Family Browser (UCSC)ZNF285
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF285
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF285 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF285
dbVarZNF285
ClinVarZNF285
1000_GenomesZNF285 
Exome Variant ServerZNF285
ExAC (Exome Aggregation Consortium)ENSG00000267508
GNOMAD BrowserENSG00000267508
Genetic variants : HAPMAP26974
Genomic Variants (DGV)ZNF285 [DGVbeta]
DECIPHERZNF285 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF285 
Mutations
ICGC Data PortalZNF285 
TCGA Data PortalZNF285 
Broad Tumor PortalZNF285
OASIS PortalZNF285 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF285  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF285
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF285
DgiDB (Drug Gene Interaction Database)ZNF285
DoCM (Curated mutations)ZNF285 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF285 (select a term)
intoGenZNF285
Cancer3DZNF285(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF285
Genetic Testing Registry ZNF285
NextProtQ96NJ3 [Medical]
TSGene26974
GENETestsZNF285
Target ValidationZNF285
Huge Navigator ZNF285 [HugePedia]
snp3D : Map Gene to Disease26974
BioCentury BCIQZNF285
ClinGenZNF285
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26974
Chemical/Pharm GKB GenePA165394833
Clinical trialZNF285
Miscellaneous
canSAR (ICR)ZNF285 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF285
EVEXZNF285
GoPubMedZNF285
iHOPZNF285
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:36:52 CET 2017

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