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ZNF286B (zinc finger protein 286B)

Identity

Alias_namesZNF286L
ZNF286C
zinc finger protein 286-like
zinc finger 286C pseudogene
Alias_symbol (synonym)ZNF590
Other alias
HGNC (Hugo) ZNF286B
LocusID (NCBI) 729288
Atlas_Id 76077
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18658430 and ends at 18682259 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF286B (17p11.2) / FBRS (16p11.2)ZNF286B (17p11.2) / TCF4 (18q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF286B   33241
Cards
Entrez_Gene (NCBI)ZNF286B  729288  zinc finger protein 286B
AliasesZNF286C; ZNF286L; ZNF590
GeneCards (Weizmann)ZNF286B
Ensembl hg19 (Hinxton)ENSG00000249459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000249459 [Gene_View]  chr17:18658430-18682259 [Contig_View]  ZNF286B [Vega]
ICGC DataPortalENSG00000249459
TCGA cBioPortalZNF286B
AceView (NCBI)ZNF286B
Genatlas (Paris)ZNF286B
WikiGenes729288
SOURCE (Princeton)ZNF286B
Genetics Home Reference (NIH)ZNF286B
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF286B  -     chr17:18658430-18682259 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF286B  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF286B - 17p11.2 [CytoView hg19]  ZNF286B - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF286B [Mapview hg19]  ZNF286B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001145045
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF286B
Cluster EST : UnigeneHs.534279 [ NCBI ]
CGAP (NCI)Hs.534279
Alternative Splicing GalleryENSG00000249459
Gene ExpressionZNF286B [ NCBI-GEO ]   ZNF286B [ EBI - ARRAY_EXPRESS ]   ZNF286B [ SEEK ]   ZNF286B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF286B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729288
GTEX Portal (Tissue expression)ZNF286B
Human Protein AtlasENSG00000249459-ZNF286B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CG31   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CG31  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CG31
Splice isoforms : SwissVarP0CG31
PhosPhoSitePlusP0CG31
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-H2C2_2 (PF13465)   
Domain families : Pfam (NCBI)pfam00096    pfam13465   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF286B
DMDM Disease mutations729288
Blocks (Seattle)ZNF286B
SuperfamilyP0CG31
Human Protein Atlas [tissue]ENSG00000249459-ZNF286B [tissue]
Peptide AtlasP0CG31
IPIIPI00921415   
Protein Interaction databases
DIP (DOE-UCLA)P0CG31
IntAct (EBI)P0CG31
FunCoupENSG00000249459
BioGRIDZNF286B
STRING (EMBL)ZNF286B
ZODIACZNF286B
Ontologies - Pathways
QuickGOP0CG31
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF286B
Atlas of Cancer Signalling NetworkZNF286B
Wikipedia pathwaysZNF286B
Orthology - Evolution
OrthoDB729288
GeneTree (enSembl)ENSG00000249459
Phylogenetic Trees/Animal Genes : TreeFamZNF286B
HOVERGENP0CG31
HOGENOMP0CG31
Homologs : HomoloGeneZNF286B
Homology/Alignments : Family Browser (UCSC)ZNF286B
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF286B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF286B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF286B
dbVarZNF286B
ClinVarZNF286B
1000_GenomesZNF286B 
Exome Variant ServerZNF286B
ExAC (Exome Aggregation Consortium)ENSG00000249459
GNOMAD BrowserENSG00000249459
Genetic variants : HAPMAP729288
Genomic Variants (DGV)ZNF286B [DGVbeta]
DECIPHERZNF286B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF286B 
Mutations
ICGC Data PortalZNF286B 
TCGA Data PortalZNF286B 
Broad Tumor PortalZNF286B
OASIS PortalZNF286B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF286B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF286B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF286B
DgiDB (Drug Gene Interaction Database)ZNF286B
DoCM (Curated mutations)ZNF286B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF286B (select a term)
intoGenZNF286B
Cancer3DZNF286B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF286B
Genetic Testing Registry ZNF286B
NextProtP0CG31 [Medical]
TSGene729288
GENETestsZNF286B
Target ValidationZNF286B
Huge Navigator ZNF286B [HugePedia]
snp3D : Map Gene to Disease729288
BioCentury BCIQZNF286B
ClinGenZNF286B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729288
Chemical/Pharm GKB GenePA162410081
Clinical trialZNF286B
Miscellaneous
canSAR (ICR)ZNF286B (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF286B
EVEXZNF286B
GoPubMedZNF286B
iHOPZNF286B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:36:53 CET 2017

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