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ZNF287 (zinc finger protein 287)

Identity

Alias_symbol (synonym)ZKSCAN13
ZSCAN45
Other alias
HGNC (Hugo) ZNF287
LocusID (NCBI) 57336
Atlas_Id 76078
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 16546963 and ends at 16569212 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NCOR1 (17p12) / ZNF287 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF287   13502
Cards
Entrez_Gene (NCBI)ZNF287  57336  zinc finger protein 287
AliasesZKSCAN13; ZSCAN45
GeneCards (Weizmann)ZNF287
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:16546963-16569212 [Contig_View]  ZNF287 [Vega]
TCGA cBioPortalZNF287
AceView (NCBI)ZNF287
Genatlas (Paris)ZNF287
WikiGenes57336
SOURCE (Princeton)ZNF287
Genetics Home Reference (NIH)ZNF287
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF287  -     chr17:16546963-16569212 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF287  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblZNF287 - 17p11.2 [CytoView hg19]  ZNF287 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIZNF287 [Mapview hg19]  ZNF287 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF027140 AF217227 AL359578 BC032002 BC041159
RefSeq transcript (Entrez)NM_001346167 NM_001346168 NM_001346169 NM_001346170 NM_001346171 NM_020653
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF287
Cluster EST : UnigeneHs.99724 [ NCBI ]
CGAP (NCI)Hs.99724
Gene ExpressionZNF287 [ NCBI-GEO ]   ZNF287 [ EBI - ARRAY_EXPRESS ]   ZNF287 [ SEEK ]   ZNF287 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF287 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57336
GTEX Portal (Tissue expression)ZNF287
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HBT7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HBT7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HBT7
Splice isoforms : SwissVarQ9HBT7
PhosPhoSitePlusQ9HBT7
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF287
DMDM Disease mutations57336
Blocks (Seattle)ZNF287
SuperfamilyQ9HBT7
Peptide AtlasQ9HBT7
HPRD11703
IPIIPI00010165   IPI00794425   
Protein Interaction databases
DIP (DOE-UCLA)Q9HBT7
IntAct (EBI)Q9HBT7
BioGRIDZNF287
STRING (EMBL)ZNF287
ZODIACZNF287
Ontologies - Pathways
QuickGOQ9HBT7
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of cytokine biosynthetic process  positive regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of cytokine biosynthetic process  positive regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF287
Atlas of Cancer Signalling NetworkZNF287
Wikipedia pathwaysZNF287
Orthology - Evolution
OrthoDB57336
Phylogenetic Trees/Animal Genes : TreeFamZNF287
HOVERGENQ9HBT7
HOGENOMQ9HBT7
Homologs : HomoloGeneZNF287
Homology/Alignments : Family Browser (UCSC)ZNF287
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF287 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF287
dbVarZNF287
ClinVarZNF287
1000_GenomesZNF287 
Exome Variant ServerZNF287
ExAC (Exome Aggregation Consortium)ZNF287 (select the gene name)
Genetic variants : HAPMAP57336
Genomic Variants (DGV)ZNF287 [DGVbeta]
DECIPHERZNF287 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF287 
Mutations
ICGC Data PortalZNF287 
TCGA Data PortalZNF287 
Broad Tumor PortalZNF287
OASIS PortalZNF287 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF287  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF287
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF287
DgiDB (Drug Gene Interaction Database)ZNF287
DoCM (Curated mutations)ZNF287 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF287 (select a term)
intoGenZNF287
Cancer3DZNF287(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF287
Genetic Testing Registry ZNF287
NextProtQ9HBT7 [Medical]
TSGene57336
GENETestsZNF287
Target ValidationZNF287
Huge Navigator ZNF287 [HugePedia]
snp3D : Map Gene to Disease57336
BioCentury BCIQZNF287
ClinGenZNF287
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57336
Chemical/Pharm GKB GenePA37788
Clinical trialZNF287
Miscellaneous
canSAR (ICR)ZNF287 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF287
EVEXZNF287
GoPubMedZNF287
iHOPZNF287
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:11 CEST 2017

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