Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF292 (zinc finger protein 292)

Identity

Alias_symbol (synonym)KIAA0530
ZFP292
bA393I2.3
Zn-15
Zn-16
Other aliasNbla00365
ZN-16
HGNC (Hugo) ZNF292
LocusID (NCBI) 23036
Atlas_Id 55231
Location 6q14.3  [Link to chromosome band 6q14]
Location_base_pair Starts at 87155549 and ends at 87265943 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF292 (6q14.3) / B3GAT2 (6q13)ZNF292 (6q14.3) / CGA (6q14.3)ZNF292 (6q14.3) / FIG4 (6q21)
ZNF292 (6q14.3) / PRSS54 (16q21)ZNF292 6q14.3 / B3GAT2 6q13ZNF292 6q14.3 / CGA 6q14.3
ZNF292 6q14.3 / FIG4 6q21ZNF292 6q14.3 / PRSS54 16q21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(6;6)(q13;q14) ZNF292/B3GAT2
ZNF292/CGA (6q14)
t(6;6)(q14;q21) ZNF292/FIG4
t(6;16)(q14;q21) ZNF292/PRSS54

External links

Nomenclature
HGNC (Hugo)ZNF292   18410
Cards
Entrez_Gene (NCBI)ZNF292  23036  zinc finger protein 292
AliasesNbla00365; ZFP292; ZN-16; Zn-15; 
bA393I2.3
GeneCards (Weizmann)ZNF292
Ensembl hg19 (Hinxton)ENSG00000188994 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188994 [Gene_View]  ENSG00000188994 [Sequence]  chr6:87155549-87265943 [Contig_View]  ZNF292 [Vega]
ICGC DataPortalENSG00000188994
TCGA cBioPortalZNF292
AceView (NCBI)ZNF292
Genatlas (Paris)ZNF292
WikiGenes23036
SOURCE (Princeton)ZNF292
Genetics Home Reference (NIH)ZNF292
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF292  -     chr6:87155549-87265943 +  6q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF292  -     6q14.3   [Description]    (hg19-Feb_2009)
EnsemblZNF292 - 6q14.3 [CytoView hg19]  ZNF292 - 6q14.3 [CytoView hg38]
Mapping of homologs : NCBIZNF292 [Mapview hg19]  ZNF292 [Mapview hg38]
OMIM616213   
Gene and transcription
Genbank (Entrez)AB011102 AB075508 AK023626 AK023712 AK123473
RefSeq transcript (Entrez)NM_001351444 NM_015021
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF292
Cluster EST : UnigeneHs.656621 [ NCBI ]
CGAP (NCI)Hs.656621
Alternative Splicing GalleryENSG00000188994
Gene ExpressionZNF292 [ NCBI-GEO ]   ZNF292 [ EBI - ARRAY_EXPRESS ]   ZNF292 [ SEEK ]   ZNF292 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF292 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23036
GTEX Portal (Tissue expression)ZNF292
Human Protein AtlasENSG00000188994-ZNF292 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60281   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60281  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60281
Splice isoforms : SwissVarO60281
PhosPhoSitePlusO60281
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF292
DMDM Disease mutations23036
Blocks (Seattle)ZNF292
PDB (RSDB)1X3C   
PDB Europe1X3C   
PDB (PDBSum)1X3C   
PDB (IMB)1X3C   
Structural Biology KnowledgeBase1X3C   
SCOP (Structural Classification of Proteins)1X3C   
CATH (Classification of proteins structures)1X3C   
SuperfamilyO60281
Human Protein Atlas [tissue]ENSG00000188994-ZNF292 [tissue]
Peptide AtlasO60281
IPIIPI00164352   IPI00419178   IPI00955853   IPI00974242   IPI00982616   IPI00981985   IPI00974265   
Protein Interaction databases
DIP (DOE-UCLA)O60281
IntAct (EBI)O60281
FunCoupENSG00000188994
BioGRIDZNF292
STRING (EMBL)ZNF292
ZODIACZNF292
Ontologies - Pathways
QuickGOO60281
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  positive regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  positive regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF292
Atlas of Cancer Signalling NetworkZNF292
Wikipedia pathwaysZNF292
Orthology - Evolution
OrthoDB23036
GeneTree (enSembl)ENSG00000188994
Phylogenetic Trees/Animal Genes : TreeFamZNF292
HOGENOMO60281
Homologs : HomoloGeneZNF292
Homology/Alignments : Family Browser (UCSC)ZNF292
Gene fusions - Rearrangements
Fusion : MitelmanZNF292/B3GAT2 [6q14.3/6q13]  
Fusion : MitelmanZNF292/CGA [6q14.3/6q14.3]  [t(6;6)(q14;q14)]  
Fusion : MitelmanZNF292/FIG4 [6q14.3/6q21]  [t(6;6)(q14;q21)]  
Fusion : MitelmanZNF292/PRSS54 [6q14.3/16q21]  [t(6;16)(q14;q21)]  
Fusion PortalZNF292 6q14.3 B3GAT2 6q13 BRCA
Fusion PortalZNF292 6q14.3 CGA 6q14.3 BRCA
Fusion PortalZNF292 6q14.3 FIG4 6q21 BRCA
Fusion PortalZNF292 6q14.3 PRSS54 16q21 PRAD
Fusion : QuiverZNF292
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF292 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF292
dbVarZNF292
ClinVarZNF292
1000_GenomesZNF292 
Exome Variant ServerZNF292
ExAC (Exome Aggregation Consortium)ENSG00000188994
GNOMAD BrowserENSG00000188994
Varsome BrowserZNF292
Genetic variants : HAPMAP23036
Genomic Variants (DGV)ZNF292 [DGVbeta]
DECIPHERZNF292 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF292 
Mutations
ICGC Data PortalZNF292 
TCGA Data PortalZNF292 
Broad Tumor PortalZNF292
OASIS PortalZNF292 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF292  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF292
intOGen PortalZNF292
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF292
DgiDB (Drug Gene Interaction Database)ZNF292
DoCM (Curated mutations)ZNF292 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF292 (select a term)
intoGenZNF292
Cancer3DZNF292(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616213   
Orphanet
DisGeNETZNF292
MedgenZNF292
Genetic Testing Registry ZNF292
NextProtO60281 [Medical]
TSGene23036
GENETestsZNF292
Target ValidationZNF292
Huge Navigator ZNF292 [HugePedia]
snp3D : Map Gene to Disease23036
BioCentury BCIQZNF292
ClinGenZNF292
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23036
Chemical/Pharm GKB GenePA134945416
Clinical trialZNF292
Miscellaneous
canSAR (ICR)ZNF292 (select the gene name)
DataMed IndexZNF292
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF292
EVEXZNF292
GoPubMedZNF292
iHOPZNF292
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 17 18:47:00 CET 2019
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