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ZNF296 (zinc finger protein 296)

Identity

Alias_namesZNF342
zinc finger protein 342
Other aliasZFP296
HGNC (Hugo) ZNF296
LocusID (NCBI) 162979
Atlas_Id 50880
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45071500 and ends at 45076588 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MPO (17q22) / ZNF296 (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF296   15981
Cards
Entrez_Gene (NCBI)ZNF296  162979  zinc finger protein 296
AliasesZFP296; ZNF342
GeneCards (Weizmann)ZNF296
Ensembl hg19 (Hinxton)ENSG00000170684 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170684 [Gene_View]  chr19:45071500-45076588 [Contig_View]  ZNF296 [Vega]
ICGC DataPortalENSG00000170684
TCGA cBioPortalZNF296
AceView (NCBI)ZNF296
Genatlas (Paris)ZNF296
WikiGenes162979
SOURCE (Princeton)ZNF296
Genetics Home Reference (NIH)ZNF296
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF296  -     chr19:45071500-45076588 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF296  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblZNF296 - 19q13.32 [CytoView hg19]  ZNF296 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIZNF296 [Mapview hg19]  ZNF296 [Mapview hg38]
OMIM613226   
Gene and transcription
Genbank (Entrez)AF447583 AY040679 BC019352 BF434185
RefSeq transcript (Entrez)NM_145288
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF296
Cluster EST : UnigeneHs.192237 [ NCBI ]
CGAP (NCI)Hs.192237
Alternative Splicing GalleryENSG00000170684
Gene ExpressionZNF296 [ NCBI-GEO ]   ZNF296 [ EBI - ARRAY_EXPRESS ]   ZNF296 [ SEEK ]   ZNF296 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF296 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162979
GTEX Portal (Tissue expression)ZNF296
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUU4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WUU4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WUU4
Splice isoforms : SwissVarQ8WUU4
PhosPhoSitePlusQ8WUU4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF296
DMDM Disease mutations162979
Blocks (Seattle)ZNF296
SuperfamilyQ8WUU4
Human Protein AtlasENSG00000170684
Peptide AtlasQ8WUU4
HPRD15782
IPIIPI00141925   IPI01011946   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUU4
IntAct (EBI)Q8WUU4
FunCoupENSG00000170684
BioGRIDZNF296
STRING (EMBL)ZNF296
ZODIACZNF296
Ontologies - Pathways
QuickGOQ8WUU4
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, RNA polymerase II transcription factor binding  molecular_function  nucleic acid binding  cellular_component  nucleus  transcription, DNA-templated  spermatogenesis  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcription factor activity, RNA polymerase II transcription factor binding  molecular_function  nucleic acid binding  cellular_component  nucleus  transcription, DNA-templated  spermatogenesis  metal ion binding  
NDEx NetworkZNF296
Atlas of Cancer Signalling NetworkZNF296
Wikipedia pathwaysZNF296
Orthology - Evolution
OrthoDB162979
GeneTree (enSembl)ENSG00000170684
Phylogenetic Trees/Animal Genes : TreeFamZNF296
HOVERGENQ8WUU4
HOGENOMQ8WUU4
Homologs : HomoloGeneZNF296
Homology/Alignments : Family Browser (UCSC)ZNF296
Gene fusions - Rearrangements
Fusion : MitelmanMPO/ZNF296 [17q22/19q13.32]  [t(17;19)(q22;q13)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF296 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF296
dbVarZNF296
ClinVarZNF296
1000_GenomesZNF296 
Exome Variant ServerZNF296
ExAC (Exome Aggregation Consortium)ZNF296 (select the gene name)
Genetic variants : HAPMAP162979
Genomic Variants (DGV)ZNF296 [DGVbeta]
DECIPHERZNF296 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF296 
Mutations
ICGC Data PortalZNF296 
TCGA Data PortalZNF296 
Broad Tumor PortalZNF296
OASIS PortalZNF296 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF296  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF296
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF296
DgiDB (Drug Gene Interaction Database)ZNF296
DoCM (Curated mutations)ZNF296 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF296 (select a term)
intoGenZNF296
Cancer3DZNF296(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613226   
Orphanet
MedgenZNF296
Genetic Testing Registry ZNF296
NextProtQ8WUU4 [Medical]
TSGene162979
GENETestsZNF296
Huge Navigator ZNF296 [HugePedia]
snp3D : Map Gene to Disease162979
BioCentury BCIQZNF296
ClinGenZNF296
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162979
Chemical/Pharm GKB GenePA37660
Clinical trialZNF296
Miscellaneous
canSAR (ICR)ZNF296 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF296
EVEXZNF296
GoPubMedZNF296
iHOPZNF296
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:44:57 CEST 2017

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