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ZNF3 (zinc finger protein 3)

Identity

Alias_nameszinc finger protein 3 (A8-51)
Alias_symbol (synonym)A8-51
KOX25
PP838
FLJ20216
HF.12
Zfp113
Other alias
HGNC (Hugo) ZNF3
LocusID (NCBI) 7551
Atlas_Id 54803
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100069971 and ends at 100082548 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LRP1 (12q13.3) / ZNF3 (7q22.1)ZNF3 (7q22.1) / ACTL6B (7q22.1)ZNF3 (7q22.1) / CLRN1-AS1 (3q25.1)
ZNF3 (7q22.1) / FZD2 (17q21.31)ZNF3 (7q22.1) / GATS (7q22.1)ZNF3 (7q22.1) / MCM7 (7q22.1)
ZNF3 (7q22.1) / RUNDC3B (7q21.12)ZNF3 7q22.1 / GATS 7q22.1ZNF3 7q22.1 / MCM7 7q22.1
ZNF3 7q22.1 / RUNDC3B 7q21.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF3   13089
Cards
Entrez_Gene (NCBI)ZNF3  7551  zinc finger protein 3
AliasesA8-51; HF.12; KOX25; PP838; 
Zfp113
GeneCards (Weizmann)ZNF3
Ensembl hg19 (Hinxton)ENSG00000166526 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166526 [Gene_View]  chr7:100069971-100082548 [Contig_View]  ZNF3 [Vega]
ICGC DataPortalENSG00000166526
TCGA cBioPortalZNF3
AceView (NCBI)ZNF3
Genatlas (Paris)ZNF3
WikiGenes7551
SOURCE (Princeton)ZNF3
Genetics Home Reference (NIH)ZNF3
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF3  -     chr7:100069971-100082548 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF3  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF3 - 7q22.1 [CytoView hg19]  ZNF3 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF3 [Mapview hg19]  ZNF3 [Mapview hg38]
OMIM194510   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001278284 NM_001278287 NM_001278290 NM_001278291 NM_001278292 NM_001318135 NM_001318136 NM_001318137 NM_017715 NM_032924
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF3
Cluster EST : UnigeneHs.435302 [ NCBI ]
CGAP (NCI)Hs.435302
Alternative Splicing GalleryENSG00000166526
Gene ExpressionZNF3 [ NCBI-GEO ]   ZNF3 [ EBI - ARRAY_EXPRESS ]   ZNF3 [ SEEK ]   ZNF3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7551
GTEX Portal (Tissue expression)ZNF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17036   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17036  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17036
Splice isoforms : SwissVarP17036
PhosPhoSitePlusP17036
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF3
DMDM Disease mutations7551
Blocks (Seattle)ZNF3
SuperfamilyP17036
Human Protein AtlasENSG00000166526
Peptide AtlasP17036
HPRD01911
IPIIPI00642617   IPI01010414   IPI00784071   IPI00925897   IPI00927355   IPI00030031   IPI01011579   
Protein Interaction databases
DIP (DOE-UCLA)P17036
IntAct (EBI)P17036
FunCoupENSG00000166526
BioGRIDZNF3
STRING (EMBL)ZNF3
ZODIACZNF3
Ontologies - Pathways
QuickGOP17036
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  zinc ion binding  cell differentiation  identical protein binding  leukocyte activation  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  zinc ion binding  cell differentiation  identical protein binding  leukocyte activation  
NDEx NetworkZNF3
Atlas of Cancer Signalling NetworkZNF3
Wikipedia pathwaysZNF3
Orthology - Evolution
OrthoDB7551
GeneTree (enSembl)ENSG00000166526
Phylogenetic Trees/Animal Genes : TreeFamZNF3
HOVERGENP17036
HOGENOMP17036
Homologs : HomoloGeneZNF3
Homology/Alignments : Family Browser (UCSC)ZNF3
Gene fusions - Rearrangements
Fusion : MitelmanZNF3/ACTL6B [7q22.1/7q22.1]  
Fusion : MitelmanZNF3/GATS [7q22.1/7q22.1]  [t(7;7)(q22;q22)]  
Fusion : MitelmanZNF3/MCM7 [7q22.1/7q22.1]  [t(7;7)(q22;q22)]  
Fusion : MitelmanZNF3/RUNDC3B [7q22.1/7q21.12]  [t(7;7)(q21;q22)]  
Fusion: TCGAZNF3 7q22.1 GATS 7q22.1 BRCA
Fusion: TCGAZNF3 7q22.1 MCM7 7q22.1 OV
Fusion: TCGAZNF3 7q22.1 RUNDC3B 7q21.12 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF3
dbVarZNF3
ClinVarZNF3
1000_GenomesZNF3 
Exome Variant ServerZNF3
ExAC (Exome Aggregation Consortium)ZNF3 (select the gene name)
Genetic variants : HAPMAP7551
Genomic Variants (DGV)ZNF3 [DGVbeta]
DECIPHERZNF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF3 
Mutations
ICGC Data PortalZNF3 
TCGA Data PortalZNF3 
Broad Tumor PortalZNF3
OASIS PortalZNF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF3
DgiDB (Drug Gene Interaction Database)ZNF3
DoCM (Curated mutations)ZNF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF3 (select a term)
intoGenZNF3
Cancer3DZNF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194510   
Orphanet
MedgenZNF3
Genetic Testing Registry ZNF3
NextProtP17036 [Medical]
TSGene7551
GENETestsZNF3
Target ValidationZNF3
Huge Navigator ZNF3 [HugePedia]
snp3D : Map Gene to Disease7551
BioCentury BCIQZNF3
ClinGenZNF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7551
Chemical/Pharm GKB GenePA37664
Clinical trialZNF3
Miscellaneous
canSAR (ICR)ZNF3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF3
EVEXZNF3
GoPubMedZNF3
iHOPZNF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:19:27 CEST 2017

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