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ZNF30 (zinc finger protein 30)

Identity

Alias_nameszinc finger protein 30 (KOX 28)
Alias_symbol (synonym)KOX28
DKFZp686N19164
FLJ20562
Other alias
HGNC (Hugo) ZNF30
LocusID (NCBI) 90075
Atlas_Id 76082
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 34926903 and ends at 34945172 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF30   13090
Cards
Entrez_Gene (NCBI)ZNF30  90075  zinc finger protein 30
AliasesKOX28
GeneCards (Weizmann)ZNF30
Ensembl hg19 (Hinxton)ENSG00000168661 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168661 [Gene_View]  chr19:34926903-34945172 [Contig_View]  ZNF30 [Vega]
ICGC DataPortalENSG00000168661
TCGA cBioPortalZNF30
AceView (NCBI)ZNF30
Genatlas (Paris)ZNF30
WikiGenes90075
SOURCE (Princeton)ZNF30
Genetics Home Reference (NIH)ZNF30
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF30  -     chr19:34926903-34945172 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF30  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblZNF30 - 19q13.11 [CytoView hg19]  ZNF30 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIZNF30 [Mapview hg19]  ZNF30 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000569 AK290435 AK295515 BC142996 BX640666
RefSeq transcript (Entrez)NM_001099437 NM_001099438 NM_194325
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF30
Cluster EST : UnigeneHs.657402 [ NCBI ]
CGAP (NCI)Hs.657402
Alternative Splicing GalleryENSG00000168661
Gene ExpressionZNF30 [ NCBI-GEO ]   ZNF30 [ EBI - ARRAY_EXPRESS ]   ZNF30 [ SEEK ]   ZNF30 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90075
GTEX Portal (Tissue expression)ZNF30
Human Protein AtlasENSG00000168661-ZNF30 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17039   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17039  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17039
Splice isoforms : SwissVarP17039
PhosPhoSitePlusP17039
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF30
DMDM Disease mutations90075
Blocks (Seattle)ZNF30
SuperfamilyP17039
Human Protein Atlas [tissue]ENSG00000168661-ZNF30 [tissue]
Peptide AtlasP17039
HPRD15763
IPIIPI00031473   IPI00795740   IPI01009245   IPI00411310   IPI00942035   
Protein Interaction databases
DIP (DOE-UCLA)P17039
IntAct (EBI)P17039
FunCoupENSG00000168661
BioGRIDZNF30
STRING (EMBL)ZNF30
ZODIACZNF30
Ontologies - Pathways
QuickGOP17039
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF30
Atlas of Cancer Signalling NetworkZNF30
Wikipedia pathwaysZNF30
Orthology - Evolution
OrthoDB90075
GeneTree (enSembl)ENSG00000168661
Phylogenetic Trees/Animal Genes : TreeFamZNF30
HOVERGENP17039
HOGENOMP17039
Homologs : HomoloGeneZNF30
Homology/Alignments : Family Browser (UCSC)ZNF30
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF30
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF30
dbVarZNF30
ClinVarZNF30
1000_GenomesZNF30 
Exome Variant ServerZNF30
ExAC (Exome Aggregation Consortium)ENSG00000168661
GNOMAD BrowserENSG00000168661
Genetic variants : HAPMAP90075
Genomic Variants (DGV)ZNF30 [DGVbeta]
DECIPHERZNF30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF30 
Mutations
ICGC Data PortalZNF30 
TCGA Data PortalZNF30 
Broad Tumor PortalZNF30
OASIS PortalZNF30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF30
DgiDB (Drug Gene Interaction Database)ZNF30
DoCM (Curated mutations)ZNF30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF30 (select a term)
intoGenZNF30
Cancer3DZNF30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF30
Genetic Testing Registry ZNF30
NextProtP17039 [Medical]
TSGene90075
GENETestsZNF30
Target ValidationZNF30
Huge Navigator ZNF30 [HugePedia]
snp3D : Map Gene to Disease90075
BioCentury BCIQZNF30
ClinGenZNF30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90075
Chemical/Pharm GKB GenePA37665
Clinical trialZNF30
Miscellaneous
canSAR (ICR)ZNF30 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF30
EVEXZNF30
GoPubMedZNF30
iHOPZNF30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:36:53 CET 2017

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