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ZNF300 (zinc finger protein 300)

Identity

Other alias-
HGNC (Hugo) ZNF300
LocusID (NCBI) 91975
Atlas_Id 52059
Location 5q33.1  [Link to chromosome band 5q33]
Location_base_pair Starts at 150894392 and ends at 150904983 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF300   13091
Cards
Entrez_Gene (NCBI)ZNF300  91975  zinc finger protein 300
Aliases
GeneCards (Weizmann)ZNF300
Ensembl hg19 (Hinxton)ENSG00000145908 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145908 [Gene_View]  chr5:150894392-150904983 [Contig_View]  ZNF300 [Vega]
ICGC DataPortalENSG00000145908
TCGA cBioPortalZNF300
AceView (NCBI)ZNF300
Genatlas (Paris)ZNF300
WikiGenes91975
SOURCE (Princeton)ZNF300
Genetics Home Reference (NIH)ZNF300
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF300  -     chr5:150894392-150904983 -  5q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF300  -     5q33.1   [Description]    (hg19-Feb_2009)
EnsemblZNF300 - 5q33.1 [CytoView hg19]  ZNF300 - 5q33.1 [CytoView hg38]
Mapping of homologs : NCBIZNF300 [Mapview hg19]  ZNF300 [Mapview hg38]
OMIM612429   
Gene and transcription
Genbank (Entrez)AF395541 AK026949 AK095642 AK096465 AK300528
RefSeq transcript (Entrez)NM_001172831 NM_001172832 NM_052860
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF300
Cluster EST : UnigeneHs.134885 [ NCBI ]
CGAP (NCI)Hs.134885
Alternative Splicing GalleryENSG00000145908
Gene ExpressionZNF300 [ NCBI-GEO ]   ZNF300 [ EBI - ARRAY_EXPRESS ]   ZNF300 [ SEEK ]   ZNF300 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF300 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91975
GTEX Portal (Tissue expression)ZNF300
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96RE9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96RE9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96RE9
Splice isoforms : SwissVarQ96RE9
PhosPhoSitePlusQ96RE9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF300
DMDM Disease mutations91975
Blocks (Seattle)ZNF300
SuperfamilyQ96RE9
Human Protein AtlasENSG00000145908
Peptide AtlasQ96RE9
HPRD15764
IPIIPI00045208   IPI00926771   IPI00943226   IPI00876844   
Protein Interaction databases
DIP (DOE-UCLA)Q96RE9
IntAct (EBI)Q96RE9
FunCoupENSG00000145908
BioGRIDZNF300
STRING (EMBL)ZNF300
ZODIACZNF300
Ontologies - Pathways
QuickGOQ96RE9
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF300
Atlas of Cancer Signalling NetworkZNF300
Wikipedia pathwaysZNF300
Orthology - Evolution
OrthoDB91975
GeneTree (enSembl)ENSG00000145908
Phylogenetic Trees/Animal Genes : TreeFamZNF300
HOVERGENQ96RE9
HOGENOMQ96RE9
Homologs : HomoloGeneZNF300
Homology/Alignments : Family Browser (UCSC)ZNF300
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF300 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF300
dbVarZNF300
ClinVarZNF300
1000_GenomesZNF300 
Exome Variant ServerZNF300
ExAC (Exome Aggregation Consortium)ZNF300 (select the gene name)
Genetic variants : HAPMAP91975
Genomic Variants (DGV)ZNF300 [DGVbeta]
DECIPHERZNF300 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF300 
Mutations
ICGC Data PortalZNF300 
TCGA Data PortalZNF300 
Broad Tumor PortalZNF300
OASIS PortalZNF300 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF300  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF300
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF300
DgiDB (Drug Gene Interaction Database)ZNF300
DoCM (Curated mutations)ZNF300 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF300 (select a term)
intoGenZNF300
Cancer3DZNF300(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612429   
Orphanet
MedgenZNF300
Genetic Testing Registry ZNF300
NextProtQ96RE9 [Medical]
TSGene91975
GENETestsZNF300
Target ValidationZNF300
Huge Navigator ZNF300 [HugePedia]
snp3D : Map Gene to Disease91975
BioCentury BCIQZNF300
ClinGenZNF300
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91975
Chemical/Pharm GKB GenePA37666
Clinical trialZNF300
Miscellaneous
canSAR (ICR)ZNF300 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF300
EVEXZNF300
GoPubMedZNF300
iHOPZNF300
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:19:27 CEST 2017

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