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ZNF302 (zinc finger protein 302)

Identity

Alias_symbol (synonym)ZNF327
ZNF135L
ZNF140L
Other aliasHSD16
MST154
MSTP154
HGNC (Hugo) ZNF302
LocusID (NCBI) 55900
Atlas_Id 76084
Location 19q13.11  [Link to chromosome band 19q13]
Location_base_pair Starts at 34677639 and ends at 34686397 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF302 (19q13.11) / CACNA1A (19p13.2)ZNF302 (19q13.11) / JCHAIN (4q13.3)ZNF302 (19q13.11) / ZNF302 (19q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF302   13848
Cards
Entrez_Gene (NCBI)ZNF302  55900  zinc finger protein 302
AliasesHSD16; MST154; MSTP154; ZNF135L; 
ZNF140L; ZNF327
GeneCards (Weizmann)ZNF302
Ensembl hg19 (Hinxton)ENSG00000089335 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000089335 [Gene_View]  chr19:34677639-34686397 [Contig_View]  ZNF302 [Vega]
ICGC DataPortalENSG00000089335
TCGA cBioPortalZNF302
AceView (NCBI)ZNF302
Genatlas (Paris)ZNF302
WikiGenes55900
SOURCE (Princeton)ZNF302
Genetics Home Reference (NIH)ZNF302
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF302  -     chr19:34677639-34686397 +  19q13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF302  -     19q13.11   [Description]    (hg19-Feb_2009)
EnsemblZNF302 - 19q13.11 [CytoView hg19]  ZNF302 - 19q13.11 [CytoView hg38]
Mapping of homologs : NCBIZNF302 [Mapview hg19]  ZNF302 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209226 AF155656 AF190157 AF265236 AF326206
RefSeq transcript (Entrez)NM_001012320 NM_001289181 NM_001289182 NM_001289183 NM_001289184 NM_001289185 NM_001289186 NM_001289187 NM_001289188 NM_001289189 NM_001289190 NM_001289191 NM_001289192 NM_018443 NM_018675
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF302
Cluster EST : UnigeneHs.436350 [ NCBI ]
CGAP (NCI)Hs.436350
Alternative Splicing GalleryENSG00000089335
Gene ExpressionZNF302 [ NCBI-GEO ]   ZNF302 [ EBI - ARRAY_EXPRESS ]   ZNF302 [ SEEK ]   ZNF302 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF302 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55900
GTEX Portal (Tissue expression)ZNF302
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NR11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NR11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NR11
Splice isoforms : SwissVarQ9NR11
PhosPhoSitePlusQ9NR11
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF302
DMDM Disease mutations55900
Blocks (Seattle)ZNF302
SuperfamilyQ9NR11
Human Protein AtlasENSG00000089335
Peptide AtlasQ9NR11
HPRD15765
IPIIPI00215608   IPI00942469   IPI00555712   IPI00967637   IPI00480139   IPI00964556   IPI00967424   IPI00964828   
Protein Interaction databases
DIP (DOE-UCLA)Q9NR11
IntAct (EBI)Q9NR11
FunCoupENSG00000089335
BioGRIDZNF302
STRING (EMBL)ZNF302
ZODIACZNF302
Ontologies - Pathways
QuickGOQ9NR11
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF302
Atlas of Cancer Signalling NetworkZNF302
Wikipedia pathwaysZNF302
Orthology - Evolution
OrthoDB55900
GeneTree (enSembl)ENSG00000089335
Phylogenetic Trees/Animal Genes : TreeFamZNF302
HOVERGENQ9NR11
HOGENOMQ9NR11
Homologs : HomoloGeneZNF302
Homology/Alignments : Family Browser (UCSC)ZNF302
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF302 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF302
dbVarZNF302
ClinVarZNF302
1000_GenomesZNF302 
Exome Variant ServerZNF302
ExAC (Exome Aggregation Consortium)ZNF302 (select the gene name)
Genetic variants : HAPMAP55900
Genomic Variants (DGV)ZNF302 [DGVbeta]
DECIPHERZNF302 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF302 
Mutations
ICGC Data PortalZNF302 
TCGA Data PortalZNF302 
Broad Tumor PortalZNF302
OASIS PortalZNF302 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF302  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF302
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF302
DgiDB (Drug Gene Interaction Database)ZNF302
DoCM (Curated mutations)ZNF302 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF302 (select a term)
intoGenZNF302
Cancer3DZNF302(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF302
Genetic Testing Registry ZNF302
NextProtQ9NR11 [Medical]
TSGene55900
GENETestsZNF302
Huge Navigator ZNF302 [HugePedia]
snp3D : Map Gene to Disease55900
BioCentury BCIQZNF302
ClinGenZNF302
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55900
Chemical/Pharm GKB GenePA37820
Clinical trialZNF302
Miscellaneous
canSAR (ICR)ZNF302 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF302
EVEXZNF302
GoPubMedZNF302
iHOPZNF302
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:45 CEST 2017

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