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ZNF304 (zinc finger protein 304)

Identity

Other alias-
HGNC (Hugo) ZNF304
LocusID (NCBI) 57343
Atlas_Id 55732
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57351274 and ends at 57359897 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATRX (Xq21.1) / ZNF304 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF304   13505
Cards
Entrez_Gene (NCBI)ZNF304  57343  zinc finger protein 304
Aliases
GeneCards (Weizmann)ZNF304
Ensembl hg19 (Hinxton)ENSG00000131845 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131845 [Gene_View]  chr19:57351274-57359897 [Contig_View]  ZNF304 [Vega]
ICGC DataPortalENSG00000131845
TCGA cBioPortalZNF304
AceView (NCBI)ZNF304
Genatlas (Paris)ZNF304
WikiGenes57343
SOURCE (Princeton)ZNF304
Genetics Home Reference (NIH)ZNF304
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF304  -     chr19:57351274-57359897 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF304  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF304 - 19q13.43 [CytoView hg19]  ZNF304 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF304 [Mapview hg19]  ZNF304 [Mapview hg38]
OMIM613840   
Gene and transcription
Genbank (Entrez)AJ276316 BC111531 BC111532 BP315423 DA788435
RefSeq transcript (Entrez)NM_001290318 NM_001290319 NM_001329456 NM_020657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF304
Cluster EST : UnigeneHs.287374 [ NCBI ]
CGAP (NCI)Hs.287374
Alternative Splicing GalleryENSG00000131845
Gene ExpressionZNF304 [ NCBI-GEO ]   ZNF304 [ EBI - ARRAY_EXPRESS ]   ZNF304 [ SEEK ]   ZNF304 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF304 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57343
GTEX Portal (Tissue expression)ZNF304
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCX3
Splice isoforms : SwissVarQ9HCX3
PhosPhoSitePlusQ9HCX3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF304
DMDM Disease mutations57343
Blocks (Seattle)ZNF304
SuperfamilyQ9HCX3
Human Protein AtlasENSG00000131845
Peptide AtlasQ9HCX3
HPRD15766
IPIIPI00010168   IPI00872320   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCX3
IntAct (EBI)Q9HCX3
FunCoupENSG00000131845
BioGRIDZNF304
STRING (EMBL)ZNF304
ZODIACZNF304
Ontologies - Pathways
QuickGOQ9HCX3
Ontology : AmiGOangiogenesis  DNA binding  protein binding  nucleus  transcription, DNA-templated  integrin-mediated signaling pathway  Ras protein signal transduction  covalent chromatin modification  positive regulation of cell migration  negative regulation of chromatin binding  positive regulation of angiogenesis  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  positive regulation of epithelial cell proliferation  positive regulation of methylation-dependent chromatin silencing  positive regulation of histone H3-K9 trimethylation  positive regulation of histone H3-K27 trimethylation  promoter-specific chromatin binding  negative regulation of anoikis  
Ontology : EGO-EBIangiogenesis  DNA binding  protein binding  nucleus  transcription, DNA-templated  integrin-mediated signaling pathway  Ras protein signal transduction  covalent chromatin modification  positive regulation of cell migration  negative regulation of chromatin binding  positive regulation of angiogenesis  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  positive regulation of epithelial cell proliferation  positive regulation of methylation-dependent chromatin silencing  positive regulation of histone H3-K9 trimethylation  positive regulation of histone H3-K27 trimethylation  promoter-specific chromatin binding  negative regulation of anoikis  
NDEx NetworkZNF304
Atlas of Cancer Signalling NetworkZNF304
Wikipedia pathwaysZNF304
Orthology - Evolution
OrthoDB57343
GeneTree (enSembl)ENSG00000131845
Phylogenetic Trees/Animal Genes : TreeFamZNF304
HOVERGENQ9HCX3
HOGENOMQ9HCX3
Homologs : HomoloGeneZNF304
Homology/Alignments : Family Browser (UCSC)ZNF304
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF304 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF304
dbVarZNF304
ClinVarZNF304
1000_GenomesZNF304 
Exome Variant ServerZNF304
ExAC (Exome Aggregation Consortium)ZNF304 (select the gene name)
Genetic variants : HAPMAP57343
Genomic Variants (DGV)ZNF304 [DGVbeta]
DECIPHERZNF304 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF304 
Mutations
ICGC Data PortalZNF304 
TCGA Data PortalZNF304 
Broad Tumor PortalZNF304
OASIS PortalZNF304 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF304  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF304
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF304
DgiDB (Drug Gene Interaction Database)ZNF304
DoCM (Curated mutations)ZNF304 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF304 (select a term)
intoGenZNF304
Cancer3DZNF304(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613840   
Orphanet
MedgenZNF304
Genetic Testing Registry ZNF304
NextProtQ9HCX3 [Medical]
TSGene57343
GENETestsZNF304
Target ValidationZNF304
Huge Navigator ZNF304 [HugePedia]
snp3D : Map Gene to Disease57343
BioCentury BCIQZNF304
ClinGenZNF304
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57343
Chemical/Pharm GKB GenePA37791
Clinical trialZNF304
Miscellaneous
canSAR (ICR)ZNF304 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF304
EVEXZNF304
GoPubMedZNF304
iHOPZNF304
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:19:27 CEST 2017

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