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ZNF311 (zinc finger protein 311)

Identity

Other aliaszf31
HGNC (Hugo) ZNF311
LocusID (NCBI) 282890
Atlas_Id 76087
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28994785 and ends at 29004065 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF311   13847
Cards
Entrez_Gene (NCBI)ZNF311  282890  zinc finger protein 311
Aliaseszf31
GeneCards (Weizmann)ZNF311
Ensembl hg19 (Hinxton)ENSG00000197935 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197935 [Gene_View]  ENSG00000197935 [Sequence]  chr6:28994785-29004065 [Contig_View]  ZNF311 [Vega]
ICGC DataPortalENSG00000197935
TCGA cBioPortalZNF311
AceView (NCBI)ZNF311
Genatlas (Paris)ZNF311
WikiGenes282890
SOURCE (Princeton)ZNF311
Genetics Home Reference (NIH)ZNF311
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF311  -     chr6:28994785-29004065 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF311  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF311 - 6p22.1 [CytoView hg19]  ZNF311 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF311 [Mapview hg19]  ZNF311 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA897711 AK289881 AL833166 BC136745 BC144385
RefSeq transcript (Entrez)NM_001010877 NM_001318534 NM_001318535 NM_001350636 NM_001350637
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)ZNF311
Cluster EST : UnigeneHs.148218 [ NCBI ]
CGAP (NCI)Hs.148218
Alternative Splicing GalleryENSG00000197935
Gene ExpressionZNF311 [ NCBI-GEO ]   ZNF311 [ EBI - ARRAY_EXPRESS ]   ZNF311 [ SEEK ]   ZNF311 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF311 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)282890
GTEX Portal (Tissue expression)ZNF311
Human Protein AtlasENSG00000197935-ZNF311 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5JNZ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5JNZ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5JNZ3
Splice isoforms : SwissVarQ5JNZ3
PhosPhoSitePlusQ5JNZ3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF311
DMDM Disease mutations282890
Blocks (Seattle)ZNF311
SuperfamilyQ5JNZ3
Human Protein Atlas [tissue]ENSG00000197935-ZNF311 [tissue]
Peptide AtlasQ5JNZ3
HPRD18325
IPIIPI00014133   IPI01021316   IPI00893387   
Protein Interaction databases
DIP (DOE-UCLA)Q5JNZ3
IntAct (EBI)Q5JNZ3
FunCoupENSG00000197935
BioGRIDZNF311
STRING (EMBL)ZNF311
ZODIACZNF311
Ontologies - Pathways
QuickGOQ5JNZ3
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF311
Atlas of Cancer Signalling NetworkZNF311
Wikipedia pathwaysZNF311
Orthology - Evolution
OrthoDB282890
GeneTree (enSembl)ENSG00000197935
Phylogenetic Trees/Animal Genes : TreeFamZNF311
HOVERGENQ5JNZ3
HOGENOMQ5JNZ3
Homologs : HomoloGeneZNF311
Homology/Alignments : Family Browser (UCSC)ZNF311
Gene fusions - Rearrangements
Fusion : QuiverZNF311
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF311 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF311
dbVarZNF311
ClinVarZNF311
1000_GenomesZNF311 
Exome Variant ServerZNF311
ExAC (Exome Aggregation Consortium)ENSG00000197935
GNOMAD BrowserENSG00000197935
Varsome BrowserZNF311
Genetic variants : HAPMAP282890
Genomic Variants (DGV)ZNF311 [DGVbeta]
DECIPHERZNF311 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF311 
Mutations
ICGC Data PortalZNF311 
TCGA Data PortalZNF311 
Broad Tumor PortalZNF311
OASIS PortalZNF311 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF311  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF311
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF311
DgiDB (Drug Gene Interaction Database)ZNF311
DoCM (Curated mutations)ZNF311 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF311 (select a term)
intoGenZNF311
Cancer3DZNF311(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF311
MedgenZNF311
Genetic Testing Registry ZNF311
NextProtQ5JNZ3 [Medical]
TSGene282890
GENETestsZNF311
Target ValidationZNF311
Huge Navigator ZNF311 [HugePedia]
snp3D : Map Gene to Disease282890
BioCentury BCIQZNF311
ClinGenZNF311
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD282890
Chemical/Pharm GKB GenePA134865305
Clinical trialZNF311
Miscellaneous
canSAR (ICR)ZNF311 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF311
EVEXZNF311
GoPubMedZNF311
iHOPZNF311
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:39:34 CEST 2018

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