Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF316 (zinc finger protein 316)

Identity

Alias_symbol (synonym)MZF-3
ENST00000305834
Other alias
HGNC (Hugo) ZNF316
LocusID (NCBI) 100131017
Atlas_Id 76088
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 6637322 and ends at 6658279 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF316   13843
Cards
Entrez_Gene (NCBI)ZNF316  100131017  zinc finger protein 316
AliasesMZF-3
GeneCards (Weizmann)ZNF316
Ensembl hg19 (Hinxton)ENSG00000205903 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205903 [Gene_View]  chr7:6637322-6658279 [Contig_View]  ZNF316 [Vega]
ICGC DataPortalENSG00000205903
TCGA cBioPortalZNF316
AceView (NCBI)ZNF316
Genatlas (Paris)ZNF316
WikiGenes100131017
SOURCE (Princeton)ZNF316
Genetics Home Reference (NIH)ZNF316
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF316  -     chr7:6637322-6658279 +  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF316  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF316 - 7p22.1 [CytoView hg19]  ZNF316 - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF316 [Mapview hg19]  ZNF316 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL832182 BX393621 BX420633 CN263497
RefSeq transcript (Entrez)NM_001278559
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF316
Cluster EST : UnigeneHs.720750 [ NCBI ]
CGAP (NCI)Hs.720750
Alternative Splicing GalleryENSG00000205903
Gene ExpressionZNF316 [ NCBI-GEO ]   ZNF316 [ EBI - ARRAY_EXPRESS ]   ZNF316 [ SEEK ]   ZNF316 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF316 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131017
GTEX Portal (Tissue expression)ZNF316
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NFI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NFI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NFI3
Splice isoforms : SwissVarA6NFI3
PhosPhoSitePlusA6NFI3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF316
DMDM Disease mutations100131017
Blocks (Seattle)ZNF316
SuperfamilyA6NFI3
Human Protein AtlasENSG00000205903
Peptide AtlasA6NFI3
IPIIPI00760941   IPI00978890   
Protein Interaction databases
DIP (DOE-UCLA)A6NFI3
IntAct (EBI)A6NFI3
FunCoupENSG00000205903
BioGRIDZNF316
STRING (EMBL)ZNF316
ZODIACZNF316
Ontologies - Pathways
QuickGOA6NFI3
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF316
Atlas of Cancer Signalling NetworkZNF316
Wikipedia pathwaysZNF316
Orthology - Evolution
OrthoDB100131017
GeneTree (enSembl)ENSG00000205903
Phylogenetic Trees/Animal Genes : TreeFamZNF316
HOVERGENA6NFI3
HOGENOMA6NFI3
Homologs : HomoloGeneZNF316
Homology/Alignments : Family Browser (UCSC)ZNF316
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF316 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF316
dbVarZNF316
ClinVarZNF316
1000_GenomesZNF316 
Exome Variant ServerZNF316
ExAC (Exome Aggregation Consortium)ZNF316 (select the gene name)
Genetic variants : HAPMAP100131017
Genomic Variants (DGV)ZNF316 [DGVbeta]
DECIPHERZNF316 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF316 
Mutations
ICGC Data PortalZNF316 
TCGA Data PortalZNF316 
Broad Tumor PortalZNF316
OASIS PortalZNF316 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZNF316
BioMutasearch ZNF316
DgiDB (Drug Gene Interaction Database)ZNF316
DoCM (Curated mutations)ZNF316 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF316 (select a term)
intoGenZNF316
Cancer3DZNF316(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF316
Genetic Testing Registry ZNF316
NextProtA6NFI3 [Medical]
TSGene100131017
GENETestsZNF316
Target ValidationZNF316
Huge Navigator ZNF316 [HugePedia]
snp3D : Map Gene to Disease100131017
BioCentury BCIQZNF316
ClinGenZNF316
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131017
Chemical/Pharm GKB GenePA134915147
Clinical trialZNF316
Miscellaneous
canSAR (ICR)ZNF316 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF316
EVEXZNF316
GoPubMedZNF316
iHOPZNF316
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:44:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.