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ZNF317 (zinc finger protein 317)

Identity

Other alias-
HGNC (Hugo) ZNF317
LocusID (NCBI) 57693
Atlas_Id 76089
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9140380 and ends at 9163415 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCA7 (19p13.3) / ZNF317 (19p13.2)LRP5 (11q13.2) / ZNF317 (19p13.2)ZNF317 (19p13.2) / AP3D1 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF317   13507
Cards
Entrez_Gene (NCBI)ZNF317  57693  zinc finger protein 317
Aliases
GeneCards (Weizmann)ZNF317
Ensembl hg19 (Hinxton)ENSG00000130803 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130803 [Gene_View]  chr19:9140380-9163415 [Contig_View]  ZNF317 [Vega]
ICGC DataPortalENSG00000130803
TCGA cBioPortalZNF317
AceView (NCBI)ZNF317
Genatlas (Paris)ZNF317
WikiGenes57693
SOURCE (Princeton)ZNF317
Genetics Home Reference (NIH)ZNF317
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF317  -     chr19:9140380-9163415 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF317  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblZNF317 - 19p13.2 [CytoView hg19]  ZNF317 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZNF317 [Mapview hg19]  ZNF317 [Mapview hg38]
OMIM613864   
Gene and transcription
Genbank (Entrez)AB046808 AF148135 AF275255 AF307096 AF307097
RefSeq transcript (Entrez)NM_001190791 NM_020933
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF317
Cluster EST : UnigeneHs.465829 [ NCBI ]
CGAP (NCI)Hs.465829
Alternative Splicing GalleryENSG00000130803
Gene ExpressionZNF317 [ NCBI-GEO ]   ZNF317 [ EBI - ARRAY_EXPRESS ]   ZNF317 [ SEEK ]   ZNF317 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF317 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57693
GTEX Portal (Tissue expression)ZNF317
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PQ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PQ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PQ6
Splice isoforms : SwissVarQ96PQ6
PhosPhoSitePlusQ96PQ6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF317
DMDM Disease mutations57693
Blocks (Seattle)ZNF317
SuperfamilyQ96PQ6
Human Protein AtlasENSG00000130803
Peptide AtlasQ96PQ6
HPRD11706
IPIIPI00550044   IPI00216533   IPI00216534   IPI00471944   IPI00909352   IPI00909834   
Protein Interaction databases
DIP (DOE-UCLA)Q96PQ6
IntAct (EBI)Q96PQ6
FunCoupENSG00000130803
BioGRIDZNF317
STRING (EMBL)ZNF317
ZODIACZNF317
Ontologies - Pathways
QuickGOQ96PQ6
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF317
Atlas of Cancer Signalling NetworkZNF317
Wikipedia pathwaysZNF317
Orthology - Evolution
OrthoDB57693
GeneTree (enSembl)ENSG00000130803
Phylogenetic Trees/Animal Genes : TreeFamZNF317
HOVERGENQ96PQ6
HOGENOMQ96PQ6
Homologs : HomoloGeneZNF317
Homology/Alignments : Family Browser (UCSC)ZNF317
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF317 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF317
dbVarZNF317
ClinVarZNF317
1000_GenomesZNF317 
Exome Variant ServerZNF317
ExAC (Exome Aggregation Consortium)ZNF317 (select the gene name)
Genetic variants : HAPMAP57693
Genomic Variants (DGV)ZNF317 [DGVbeta]
DECIPHERZNF317 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF317 
Mutations
ICGC Data PortalZNF317 
TCGA Data PortalZNF317 
Broad Tumor PortalZNF317
OASIS PortalZNF317 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF317  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF317
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF317
DgiDB (Drug Gene Interaction Database)ZNF317
DoCM (Curated mutations)ZNF317 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF317 (select a term)
intoGenZNF317
Cancer3DZNF317(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613864   
Orphanet
MedgenZNF317
Genetic Testing Registry ZNF317
NextProtQ96PQ6 [Medical]
TSGene57693
GENETestsZNF317
Target ValidationZNF317
Huge Navigator ZNF317 [HugePedia]
snp3D : Map Gene to Disease57693
BioCentury BCIQZNF317
ClinGenZNF317
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57693
Chemical/Pharm GKB GenePA37793
Clinical trialZNF317
Miscellaneous
canSAR (ICR)ZNF317 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF317
EVEXZNF317
GoPubMedZNF317
iHOPZNF317
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:37 CEST 2017

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