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ZNF318 (zinc finger protein 318)

Identity

Alias_symbol (synonym)HRIHFB2436
ZFP318
Other aliasTZF
HGNC (Hugo) ZNF318
LocusID (NCBI) 24149
Atlas_Id 76090
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 43336070 and ends at 43369443 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF318 (6p21.1) / ATF6 (1q23.3)ZNF318 (6p21.1) / PDE3A (12p12.2)ZNF318 (6p21.1) / PPP1R9B (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;12)(p21;p12) ZNF318/PDE3A


External links

Nomenclature
HGNC (Hugo)ZNF318   13578
Cards
Entrez_Gene (NCBI)ZNF318  24149  zinc finger protein 318
AliasesHRIHFB2436; TZF; ZFP318
GeneCards (Weizmann)ZNF318
Ensembl hg19 (Hinxton)ENSG00000171467 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171467 [Gene_View]  ENSG00000171467 [Sequence]  chr6:43336070-43369443 [Contig_View]  ZNF318 [Vega]
ICGC DataPortalENSG00000171467
TCGA cBioPortalZNF318
AceView (NCBI)ZNF318
Genatlas (Paris)ZNF318
WikiGenes24149
SOURCE (Princeton)ZNF318
Genetics Home Reference (NIH)ZNF318
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF318  -     chr6:43336070-43369443 -  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF318  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblZNF318 - 6p21.1 [CytoView hg19]  ZNF318 - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBIZNF318 [Mapview hg19]  ZNF318 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB015342 AF090114 AF121141 AK001200 AK025505
RefSeq transcript (Entrez)NM_014345
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF318
Cluster EST : UnigeneHs.509718 [ NCBI ]
CGAP (NCI)Hs.509718
Alternative Splicing GalleryENSG00000171467
Gene ExpressionZNF318 [ NCBI-GEO ]   ZNF318 [ EBI - ARRAY_EXPRESS ]   ZNF318 [ SEEK ]   ZNF318 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF318 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)24149
GTEX Portal (Tissue expression)ZNF318
Human Protein AtlasENSG00000171467-ZNF318 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VUA4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VUA4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VUA4
Splice isoforms : SwissVarQ5VUA4
PhosPhoSitePlusQ5VUA4
Domains : Interpro (EBI)Znf_U1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZNF318
DMDM Disease mutations24149
Blocks (Seattle)ZNF318
SuperfamilyQ5VUA4
Human Protein Atlas [tissue]ENSG00000171467-ZNF318 [tissue]
Peptide AtlasQ5VUA4
HPRD11707
IPIIPI00413365   IPI00168692   
Protein Interaction databases
DIP (DOE-UCLA)Q5VUA4
IntAct (EBI)Q5VUA4
FunCoupENSG00000171467
BioGRIDZNF318
STRING (EMBL)ZNF318
ZODIACZNF318
Ontologies - Pathways
QuickGOQ5VUA4
Ontology : AmiGOnucleic acid binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  meiotic cell cycle  
Ontology : EGO-EBInucleic acid binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  meiotic cell cycle  
NDEx NetworkZNF318
Atlas of Cancer Signalling NetworkZNF318
Wikipedia pathwaysZNF318
Orthology - Evolution
OrthoDB24149
GeneTree (enSembl)ENSG00000171467
Phylogenetic Trees/Animal Genes : TreeFamZNF318
HOVERGENQ5VUA4
HOGENOMQ5VUA4
Homologs : HomoloGeneZNF318
Homology/Alignments : Family Browser (UCSC)ZNF318
Gene fusions - Rearrangements
Fusion : QuiverZNF318
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF318 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF318
dbVarZNF318
ClinVarZNF318
1000_GenomesZNF318 
Exome Variant ServerZNF318
ExAC (Exome Aggregation Consortium)ENSG00000171467
GNOMAD BrowserENSG00000171467
Varsome BrowserZNF318
Genetic variants : HAPMAP24149
Genomic Variants (DGV)ZNF318 [DGVbeta]
DECIPHERZNF318 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF318 
Mutations
ICGC Data PortalZNF318 
TCGA Data PortalZNF318 
Broad Tumor PortalZNF318
OASIS PortalZNF318 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF318  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF318
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF318
DgiDB (Drug Gene Interaction Database)ZNF318
DoCM (Curated mutations)ZNF318 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF318 (select a term)
intoGenZNF318
Cancer3DZNF318(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF318
MedgenZNF318
Genetic Testing Registry ZNF318
NextProtQ5VUA4 [Medical]
TSGene24149
GENETestsZNF318
Target ValidationZNF318
Huge Navigator ZNF318 [HugePedia]
snp3D : Map Gene to Disease24149
BioCentury BCIQZNF318
ClinGenZNF318
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD24149
Chemical/Pharm GKB GenePA134923137
Clinical trialZNF318
Miscellaneous
canSAR (ICR)ZNF318 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF318
EVEXZNF318
GoPubMedZNF318
iHOPZNF318
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:39:35 CEST 2018

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