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ZNF329 (zinc finger protein 329)

Identity

Other alias-
HGNC (Hugo) ZNF329
LocusID (NCBI) 79673
Atlas_Id 57213
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58126328 and ends at 58126664 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC2A13 (12q12) / ZNF329 (19q13.43)ZNF329 (19q13.43) / SNRPN (15q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF329   14209
Cards
Entrez_Gene (NCBI)ZNF329  79673  zinc finger protein 329
Aliases
GeneCards (Weizmann)ZNF329
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:58126328-58126664 [Contig_View]  ZNF329 [Vega]
TCGA cBioPortalZNF329
AceView (NCBI)ZNF329
Genatlas (Paris)ZNF329
WikiGenes79673
SOURCE (Princeton)ZNF329
Genetics Home Reference (NIH)ZNF329
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF329  -     chr19:58126328-58126664 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF329  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZNF329 - 19q13.43 [CytoView hg19]  ZNF329 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZNF329 [Mapview hg19]  ZNF329 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF085857 AK022648 AK090893 AK095349 AK096542
RefSeq transcript (Entrez)NM_024620
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF329
Cluster EST : UnigeneHs.458377 [ NCBI ]
CGAP (NCI)Hs.458377
Gene ExpressionZNF329 [ NCBI-GEO ]   ZNF329 [ EBI - ARRAY_EXPRESS ]   ZNF329 [ SEEK ]   ZNF329 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF329 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79673
GTEX Portal (Tissue expression)ZNF329
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UD4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UD4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UD4
Splice isoforms : SwissVarQ86UD4
PhosPhoSitePlusQ86UD4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF329
DMDM Disease mutations79673
Blocks (Seattle)ZNF329
SuperfamilyQ86UD4
Peptide AtlasQ86UD4
IPIIPI00328706   
Protein Interaction databases
DIP (DOE-UCLA)Q86UD4
IntAct (EBI)Q86UD4
BioGRIDZNF329
STRING (EMBL)ZNF329
ZODIACZNF329
Ontologies - Pathways
QuickGOQ86UD4
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF329
Atlas of Cancer Signalling NetworkZNF329
Wikipedia pathwaysZNF329
Orthology - Evolution
OrthoDB79673
Phylogenetic Trees/Animal Genes : TreeFamZNF329
HOVERGENQ86UD4
HOGENOMQ86UD4
Homologs : HomoloGeneZNF329
Homology/Alignments : Family Browser (UCSC)ZNF329
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF329
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF329 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF329
dbVarZNF329
ClinVarZNF329
1000_GenomesZNF329 
Exome Variant ServerZNF329
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP79673
Genomic Variants (DGV)ZNF329 [DGVbeta]
DECIPHERZNF329 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF329 
Mutations
ICGC Data PortalZNF329 
TCGA Data PortalZNF329 
Broad Tumor PortalZNF329
OASIS PortalZNF329 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF329  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF329
BioMutasearch ZNF329
DgiDB (Drug Gene Interaction Database)ZNF329
DoCM (Curated mutations)ZNF329 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF329 (select a term)
intoGenZNF329
Cancer3DZNF329(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF329
Genetic Testing Registry ZNF329
NextProtQ86UD4 [Medical]
TSGene79673
GENETestsZNF329
Target ValidationZNF329
Huge Navigator ZNF329 [HugePedia]
snp3D : Map Gene to Disease79673
BioCentury BCIQZNF329
ClinGenZNF329
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79673
Chemical/Pharm GKB GenePA37858
Clinical trialZNF329
Miscellaneous
canSAR (ICR)ZNF329 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF329
EVEXZNF329
GoPubMedZNF329
iHOPZNF329
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:18:19 CET 2017

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