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ZNF330 (zinc finger protein 330)

Identity

Alias_symbol (synonym)NOA36
HSA6591
Other alias
HGNC (Hugo) ZNF330
LocusID (NCBI) 27309
Atlas_Id 76102
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 141220887 and ends at 141234696 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF330 (4q31.21) / EP400NL (12q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF330   15462
Cards
Entrez_Gene (NCBI)ZNF330  27309  zinc finger protein 330
AliasesHSA6591; NOA36
GeneCards (Weizmann)ZNF330
Ensembl hg19 (Hinxton)ENSG00000109445 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109445 [Gene_View]  chr4:141220887-141234696 [Contig_View]  ZNF330 [Vega]
ICGC DataPortalENSG00000109445
TCGA cBioPortalZNF330
AceView (NCBI)ZNF330
Genatlas (Paris)ZNF330
WikiGenes27309
SOURCE (Princeton)ZNF330
Genetics Home Reference (NIH)ZNF330
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF330  -     chr4:141220887-141234696 +  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF330  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblZNF330 - 4q31.21 [CytoView hg19]  ZNF330 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIZNF330 [Mapview hg19]  ZNF330 [Mapview hg38]
OMIM609550   
Gene and transcription
Genbank (Entrez)AJ006591 AK002106 AK223609 AK294089 AK315463
RefSeq transcript (Entrez)NM_001292002 NM_014487
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF330
Cluster EST : UnigeneHs.120766 [ NCBI ]
CGAP (NCI)Hs.120766
Alternative Splicing GalleryENSG00000109445
Gene ExpressionZNF330 [ NCBI-GEO ]   ZNF330 [ EBI - ARRAY_EXPRESS ]   ZNF330 [ SEEK ]   ZNF330 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF330 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27309
GTEX Portal (Tissue expression)ZNF330
Human Protein AtlasENSG00000109445-ZNF330 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3S2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3S2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3S2
Splice isoforms : SwissVarQ9Y3S2
PhosPhoSitePlusQ9Y3S2
Domains : Interpro (EBI)NOA36   
Domain families : Pfam (Sanger)NOA36 (PF06524)   
Domain families : Pfam (NCBI)pfam06524   
Conserved Domain (NCBI)ZNF330
DMDM Disease mutations27309
Blocks (Seattle)ZNF330
SuperfamilyQ9Y3S2
Human Protein Atlas [tissue]ENSG00000109445-ZNF330 [tissue]
Peptide AtlasQ9Y3S2
HPRD15775
IPIIPI00004942   IPI01015495   IPI00968031   IPI00966541   IPI00966257   IPI00968196   IPI00965313   IPI00967918   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3S2
IntAct (EBI)Q9Y3S2
FunCoupENSG00000109445
BioGRIDZNF330
STRING (EMBL)ZNF330
ZODIACZNF330
Ontologies - Pathways
QuickGOQ9Y3S2
Ontology : AmiGOchromosome, centromeric region  protein binding  nucleolus  biological_process  zinc ion binding  midbody  metal ion binding  
Ontology : EGO-EBIchromosome, centromeric region  protein binding  nucleolus  biological_process  zinc ion binding  midbody  metal ion binding  
NDEx NetworkZNF330
Atlas of Cancer Signalling NetworkZNF330
Wikipedia pathwaysZNF330
Orthology - Evolution
OrthoDB27309
GeneTree (enSembl)ENSG00000109445
Phylogenetic Trees/Animal Genes : TreeFamZNF330
HOVERGENQ9Y3S2
HOGENOMQ9Y3S2
Homologs : HomoloGeneZNF330
Homology/Alignments : Family Browser (UCSC)ZNF330
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF330
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF330 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF330
dbVarZNF330
ClinVarZNF330
1000_GenomesZNF330 
Exome Variant ServerZNF330
ExAC (Exome Aggregation Consortium)ENSG00000109445
GNOMAD BrowserENSG00000109445
Genetic variants : HAPMAP27309
Genomic Variants (DGV)ZNF330 [DGVbeta]
DECIPHERZNF330 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF330 
Mutations
ICGC Data PortalZNF330 
TCGA Data PortalZNF330 
Broad Tumor PortalZNF330
OASIS PortalZNF330 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF330  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF330
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF330
DgiDB (Drug Gene Interaction Database)ZNF330
DoCM (Curated mutations)ZNF330 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF330 (select a term)
intoGenZNF330
Cancer3DZNF330(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609550   
Orphanet
MedgenZNF330
Genetic Testing Registry ZNF330
NextProtQ9Y3S2 [Medical]
TSGene27309
GENETestsZNF330
Target ValidationZNF330
Huge Navigator ZNF330 [HugePedia]
snp3D : Map Gene to Disease27309
BioCentury BCIQZNF330
ClinGenZNF330
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27309
Chemical/Pharm GKB GenePA134925405
Clinical trialZNF330
Miscellaneous
canSAR (ICR)ZNF330 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF330
EVEXZNF330
GoPubMedZNF330
iHOPZNF330
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:36:57 CET 2017

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