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ZNF331 (zinc finger protein 331)

Identity

Alias_symbol (synonym)RITA
ZNF463
ZNF361
Other alias
HGNC (Hugo) ZNF331
LocusID (NCBI) 55422
Atlas_Id 42879
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53538079 and ends at 53580269 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF280C (Xq26.1) / ZNF331 (19q13.42)ZNF331 (19q13.42) / ? ()ZNF331 (19q13.42) / NLRP11 (19q13.42)
ZNF331 (19q13.42) / NLRP4 (19q13.43)ZNF331 (19q13.42) / WDR37 (10p15.3)ZNF331 19q13.42 / NLRP11 19q13.42
ZNF331 19q13.42 / NLRP4 19q13.43

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF331   15489
LRG (Locus Reference Genomic)LRG_1068
Cards
Entrez_Gene (NCBI)ZNF331  55422  zinc finger protein 331
AliasesRITA; ZNF361; ZNF463
GeneCards (Weizmann)ZNF331
Ensembl hg19 (Hinxton)ENSG00000130844 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130844 [Gene_View]  chr19:53538079-53580269 [Contig_View]  ZNF331 [Vega]
ICGC DataPortalENSG00000130844
TCGA cBioPortalZNF331
AceView (NCBI)ZNF331
Genatlas (Paris)ZNF331
WikiGenes55422
SOURCE (Princeton)ZNF331
Genetics Home Reference (NIH)ZNF331
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF331  -     chr19:53538079-53580269 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF331  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblZNF331 - 19q13.42 [CytoView hg19]  ZNF331 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIZNF331 [Mapview hg19]  ZNF331 [Mapview hg38]
OMIM606043   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001079906 NM_001079907 NM_001253798 NM_001253799 NM_001253800 NM_001253801 NM_001317113 NM_001317114 NM_001317115 NM_001317116 NM_001317117 NM_001317118 NM_001317119 NM_001317120 NM_001317121 NM_018555
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF331
Cluster EST : UnigeneHs.185674 [ NCBI ]
CGAP (NCI)Hs.185674
Alternative Splicing GalleryENSG00000130844
Gene ExpressionZNF331 [ NCBI-GEO ]   ZNF331 [ EBI - ARRAY_EXPRESS ]   ZNF331 [ SEEK ]   ZNF331 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF331 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55422
GTEX Portal (Tissue expression)ZNF331
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NQX6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NQX6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NQX6
Splice isoforms : SwissVarQ9NQX6
PhosPhoSitePlusQ9NQX6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF331
DMDM Disease mutations55422
Blocks (Seattle)ZNF331
SuperfamilyQ9NQX6
Human Protein AtlasENSG00000130844
Peptide AtlasQ9NQX6
HPRD05827
IPIIPI00101500   IPI00976154   IPI00967354   IPI00967626   IPI00967940   IPI00968131   IPI00967881   IPI00964574   IPI00966641   IPI00966120   IPI00965712   IPI00964901   IPI00967522   
Protein Interaction databases
DIP (DOE-UCLA)Q9NQX6
IntAct (EBI)Q9NQX6
FunCoupENSG00000130844
BioGRIDZNF331
STRING (EMBL)ZNF331
ZODIACZNF331
Ontologies - Pathways
QuickGOQ9NQX6
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZNF331
Atlas of Cancer Signalling NetworkZNF331
Wikipedia pathwaysZNF331
Orthology - Evolution
OrthoDB55422
GeneTree (enSembl)ENSG00000130844
Phylogenetic Trees/Animal Genes : TreeFamZNF331
HOVERGENQ9NQX6
HOGENOMQ9NQX6
Homologs : HomoloGeneZNF331
Homology/Alignments : Family Browser (UCSC)ZNF331
Gene fusions - Rearrangements
Fusion : MitelmanZNF331/NLRP11 [19q13.42/19q13.42]  
Fusion : MitelmanZNF331/NLRP4 [19q13.42/19q13.43]  [t(19;19)(q13;q13)]  
Fusion: TCGAZNF331 19q13.42 NLRP11 19q13.42 BRCA
Fusion: TCGAZNF331 19q13.42 NLRP4 19q13.43 LUSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF331 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF331
dbVarZNF331
ClinVarZNF331
1000_GenomesZNF331 
Exome Variant ServerZNF331
ExAC (Exome Aggregation Consortium)ZNF331 (select the gene name)
Genetic variants : HAPMAP55422
Genomic Variants (DGV)ZNF331 [DGVbeta]
DECIPHERZNF331 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF331 
Mutations
ICGC Data PortalZNF331 
TCGA Data PortalZNF331 
Broad Tumor PortalZNF331
OASIS PortalZNF331 [ Somatic mutations - Copy number]
Cancer Gene: CensusZNF331 
Somatic Mutations in Cancer : COSMICZNF331  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF331
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF331
DgiDB (Drug Gene Interaction Database)ZNF331
DoCM (Curated mutations)ZNF331 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF331 (select a term)
intoGenZNF331
Cancer3DZNF331(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606043   
Orphanet
MedgenZNF331
Genetic Testing Registry ZNF331
NextProtQ9NQX6 [Medical]
TSGene55422
GENETestsZNF331
Target ValidationZNF331
Huge Navigator ZNF331 [HugePedia]
snp3D : Map Gene to Disease55422
BioCentury BCIQZNF331
ClinGenZNF331
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55422
Chemical/Pharm GKB GenePA134866703
Clinical trialZNF331
Miscellaneous
canSAR (ICR)ZNF331 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF331
EVEXZNF331
GoPubMedZNF331
iHOPZNF331
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 13:03:44 CEST 2017

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