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ZNF333 (zinc finger protein 333)

Identity

Alias_symbol (synonym)KIAA1806
Other alias-
HGNC (Hugo) ZNF333
LocusID (NCBI) 84449
Atlas_Id 76103
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14690040 and ends at 14733746 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PRRC2B (9q34.13) / ZNF333 (19p13.12)ZNF333 (19p13.12) / KLHDC9 (1q23.3)ZNF333 (19p13.12) / ZFR (5p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF333   15624
Cards
Entrez_Gene (NCBI)ZNF333  84449  zinc finger protein 333
Aliases
GeneCards (Weizmann)ZNF333
Ensembl hg19 (Hinxton)ENSG00000160961 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160961 [Gene_View]  chr19:14690040-14733746 [Contig_View]  ZNF333 [Vega]
ICGC DataPortalENSG00000160961
TCGA cBioPortalZNF333
AceView (NCBI)ZNF333
Genatlas (Paris)ZNF333
WikiGenes84449
SOURCE (Princeton)ZNF333
Genetics Home Reference (NIH)ZNF333
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF333  -     chr19:14690040-14733746 +  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF333  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF333 - 19p13.12 [CytoView hg19]  ZNF333 - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF333 [Mapview hg19]  ZNF333 [Mapview hg38]
OMIM611811   
Gene and transcription
Genbank (Entrez)AB058709 AF372702 AK094028 AK095142 AK122817
RefSeq transcript (Entrez)NM_001300912 NM_032433
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF333
Cluster EST : UnigeneHs.515215 [ NCBI ]
CGAP (NCI)Hs.515215
Alternative Splicing GalleryENSG00000160961
Gene ExpressionZNF333 [ NCBI-GEO ]   ZNF333 [ EBI - ARRAY_EXPRESS ]   ZNF333 [ SEEK ]   ZNF333 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF333 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84449
GTEX Portal (Tissue expression)ZNF333
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96JL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96JL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96JL9
Splice isoforms : SwissVarQ96JL9
PhosPhoSitePlusQ96JL9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_BED    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)    zf-H2C2_2 (PF13465)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912    pfam13465   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_BED (SM00614)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF333
DMDM Disease mutations84449
Blocks (Seattle)ZNF333
SuperfamilyQ96JL9
Human Protein AtlasENSG00000160961
Peptide AtlasQ96JL9
HPRD15776
IPIIPI00064209   IPI00646615   IPI01014925   IPI00440157   
Protein Interaction databases
DIP (DOE-UCLA)Q96JL9
IntAct (EBI)Q96JL9
FunCoupENSG00000160961
BioGRIDZNF333
STRING (EMBL)ZNF333
ZODIACZNF333
Ontologies - Pathways
QuickGOQ96JL9
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF333
Atlas of Cancer Signalling NetworkZNF333
Wikipedia pathwaysZNF333
Orthology - Evolution
OrthoDB84449
GeneTree (enSembl)ENSG00000160961
Phylogenetic Trees/Animal Genes : TreeFamZNF333
HOVERGENQ96JL9
HOGENOMQ96JL9
Homologs : HomoloGeneZNF333
Homology/Alignments : Family Browser (UCSC)ZNF333
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF333 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF333
dbVarZNF333
ClinVarZNF333
1000_GenomesZNF333 
Exome Variant ServerZNF333
ExAC (Exome Aggregation Consortium)ZNF333 (select the gene name)
Genetic variants : HAPMAP84449
Genomic Variants (DGV)ZNF333 [DGVbeta]
DECIPHERZNF333 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF333 
Mutations
ICGC Data PortalZNF333 
TCGA Data PortalZNF333 
Broad Tumor PortalZNF333
OASIS PortalZNF333 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF333  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF333
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF333
DgiDB (Drug Gene Interaction Database)ZNF333
DoCM (Curated mutations)ZNF333 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF333 (select a term)
intoGenZNF333
Cancer3DZNF333(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611811   
Orphanet
MedgenZNF333
Genetic Testing Registry ZNF333
NextProtQ96JL9 [Medical]
TSGene84449
GENETestsZNF333
Target ValidationZNF333
Huge Navigator ZNF333 [HugePedia]
snp3D : Map Gene to Disease84449
BioCentury BCIQZNF333
ClinGenZNF333
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84449
Chemical/Pharm GKB GenePA134929553
Clinical trialZNF333
Miscellaneous
canSAR (ICR)ZNF333 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF333
EVEXZNF333
GoPubMedZNF333
iHOPZNF333
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:38 CEST 2017

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