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ZNF334 (zinc finger protein 334)

Identity

Alias_symbol (synonym)bA179N14.1
Other alias-
HGNC (Hugo) ZNF334
LocusID (NCBI) 55713
Atlas_Id 76104
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 46499630 and ends at 46513559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PUM2 (2p24.1) / ZNF334 (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF334   15806
Cards
Entrez_Gene (NCBI)ZNF334  55713  zinc finger protein 334
Aliases
GeneCards (Weizmann)ZNF334
Ensembl hg19 (Hinxton)ENSG00000198185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198185 [Gene_View]  chr20:46499630-46513559 [Contig_View]  ZNF334 [Vega]
ICGC DataPortalENSG00000198185
TCGA cBioPortalZNF334
AceView (NCBI)ZNF334
Genatlas (Paris)ZNF334
WikiGenes55713
SOURCE (Princeton)ZNF334
Genetics Home Reference (NIH)ZNF334
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF334  -     chr20:46499630-46513559 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF334  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF334 - 20q13.12 [CytoView hg19]  ZNF334 - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF334 [Mapview hg19]  ZNF334 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001331 AK057717 AK095611 AL833936 BC024177
RefSeq transcript (Entrez)NM_001270497 NM_018102 NM_199441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF334
Cluster EST : UnigeneHs.147041 [ NCBI ]
CGAP (NCI)Hs.147041
Alternative Splicing GalleryENSG00000198185
Gene ExpressionZNF334 [ NCBI-GEO ]   ZNF334 [ EBI - ARRAY_EXPRESS ]   ZNF334 [ SEEK ]   ZNF334 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF334 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55713
GTEX Portal (Tissue expression)ZNF334
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HCZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HCZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HCZ1
Splice isoforms : SwissVarQ9HCZ1
PhosPhoSitePlusQ9HCZ1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF334
DMDM Disease mutations55713
Blocks (Seattle)ZNF334
SuperfamilyQ9HCZ1
Human Protein AtlasENSG00000198185
Peptide AtlasQ9HCZ1
HPRD15777
IPIIPI00336179   IPI00884364   IPI00399317   
Protein Interaction databases
DIP (DOE-UCLA)Q9HCZ1
IntAct (EBI)Q9HCZ1
FunCoupENSG00000198185
BioGRIDZNF334
STRING (EMBL)ZNF334
ZODIACZNF334
Ontologies - Pathways
QuickGOQ9HCZ1
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF334
Atlas of Cancer Signalling NetworkZNF334
Wikipedia pathwaysZNF334
Orthology - Evolution
OrthoDB55713
GeneTree (enSembl)ENSG00000198185
Phylogenetic Trees/Animal Genes : TreeFamZNF334
HOVERGENQ9HCZ1
HOGENOMQ9HCZ1
Homologs : HomoloGeneZNF334
Homology/Alignments : Family Browser (UCSC)ZNF334
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF334 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF334
dbVarZNF334
ClinVarZNF334
1000_GenomesZNF334 
Exome Variant ServerZNF334
ExAC (Exome Aggregation Consortium)ZNF334 (select the gene name)
Genetic variants : HAPMAP55713
Genomic Variants (DGV)ZNF334 [DGVbeta]
DECIPHERZNF334 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF334 
Mutations
ICGC Data PortalZNF334 
TCGA Data PortalZNF334 
Broad Tumor PortalZNF334
OASIS PortalZNF334 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF334  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF334
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF334
DgiDB (Drug Gene Interaction Database)ZNF334
DoCM (Curated mutations)ZNF334 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF334 (select a term)
intoGenZNF334
Cancer3DZNF334(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF334
Genetic Testing Registry ZNF334
NextProtQ9HCZ1 [Medical]
TSGene55713
GENETestsZNF334
Huge Navigator ZNF334 [HugePedia]
snp3D : Map Gene to Disease55713
BioCentury BCIQZNF334
ClinGenZNF334
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55713
Chemical/Pharm GKB GenePA38040
Clinical trialZNF334
Miscellaneous
canSAR (ICR)ZNF334 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF334
EVEXZNF334
GoPubMedZNF334
iHOPZNF334
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:49 CEST 2017

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