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ZNF33A (zinc finger protein 33A)

Identity

Alias_namesZNF33
ZNF11A
zinc finger protein 33a (KOX 31)
zinc finger protein 11A
Alias_symbol (synonym)KOX5
KOX31
KIAA0065
FLJ23404
ZZAPK
Other aliasKOX2
NF11A
ZNF11
HGNC (Hugo) ZNF33A
LocusID (NCBI) 7581
Atlas_Id 76106
Location 10p11.1  [Link to chromosome band 10p11]
Location_base_pair Starts at 38010650 and ends at 38060067 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF33A (10p11.1) / PARD3 (10p11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF33A   13096
Cards
Entrez_Gene (NCBI)ZNF33A  7581  zinc finger protein 33A
AliasesKOX2; KOX31; KOX5; NF11A; 
ZNF11; ZNF11A; ZNF33; ZZAPK
GeneCards (Weizmann)ZNF33A
Ensembl hg19 (Hinxton)ENSG00000189180 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189180 [Gene_View]  chr10:38010650-38060067 [Contig_View]  ZNF33A [Vega]
ICGC DataPortalENSG00000189180
TCGA cBioPortalZNF33A
AceView (NCBI)ZNF33A
Genatlas (Paris)ZNF33A
WikiGenes7581
SOURCE (Princeton)ZNF33A
Genetics Home Reference (NIH)ZNF33A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF33A  -     chr10:38010650-38060067 +  10p11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF33A  -     10p11.1   [Description]    (hg19-Feb_2009)
EnsemblZNF33A - 10p11.1 [CytoView hg19]  ZNF33A - 10p11.1 [CytoView hg38]
Mapping of homologs : NCBIZNF33A [Mapview hg19]  ZNF33A [Mapview hg38]
OMIM194521   
Gene and transcription
Genbank (Entrez)AF063599 AF086531 AI300433 AK027057 AK292844
RefSeq transcript (Entrez)NM_001278170 NM_001278171 NM_001278173 NM_001278174 NM_001278175 NM_001278176 NM_001278177 NM_001278178 NM_001278179 NM_001324175 NM_001324176 NM_001324177 NM_001324178 NM_006954 NM_006974
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF33A
Cluster EST : UnigeneHs.435774 [ NCBI ]
CGAP (NCI)Hs.435774
Alternative Splicing GalleryENSG00000189180
Gene ExpressionZNF33A [ NCBI-GEO ]   ZNF33A [ EBI - ARRAY_EXPRESS ]   ZNF33A [ SEEK ]   ZNF33A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF33A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7581
GTEX Portal (Tissue expression)ZNF33A
Human Protein AtlasENSG00000189180-ZNF33A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ06730   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ06730  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ06730
Splice isoforms : SwissVarQ06730
PhosPhoSitePlusQ06730
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF33A
DMDM Disease mutations7581
Blocks (Seattle)ZNF33A
SuperfamilyQ06730
Human Protein Atlas [tissue]ENSG00000189180-ZNF33A [tissue]
Peptide AtlasQ06730
HPRD11710
IPIIPI00299890   IPI00942325   IPI00940665   IPI00023524   IPI00334720   IPI00873775   
Protein Interaction databases
DIP (DOE-UCLA)Q06730
IntAct (EBI)Q06730
FunCoupENSG00000189180
BioGRIDZNF33A
STRING (EMBL)ZNF33A
ZODIACZNF33A
Ontologies - Pathways
QuickGOQ06730
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF33A
Atlas of Cancer Signalling NetworkZNF33A
Wikipedia pathwaysZNF33A
Orthology - Evolution
OrthoDB7581
GeneTree (enSembl)ENSG00000189180
Phylogenetic Trees/Animal Genes : TreeFamZNF33A
HOVERGENQ06730
HOGENOMQ06730
Homologs : HomoloGeneZNF33A
Homology/Alignments : Family Browser (UCSC)ZNF33A
Gene fusions - Rearrangements
Tumor Fusion PortalZNF33A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF33A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF33A
dbVarZNF33A
ClinVarZNF33A
1000_GenomesZNF33A 
Exome Variant ServerZNF33A
ExAC (Exome Aggregation Consortium)ENSG00000189180
GNOMAD BrowserENSG00000189180
Genetic variants : HAPMAP7581
Genomic Variants (DGV)ZNF33A [DGVbeta]
DECIPHERZNF33A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF33A 
Mutations
ICGC Data PortalZNF33A 
TCGA Data PortalZNF33A 
Broad Tumor PortalZNF33A
OASIS PortalZNF33A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF33A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF33A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF33A
DgiDB (Drug Gene Interaction Database)ZNF33A
DoCM (Curated mutations)ZNF33A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF33A (select a term)
intoGenZNF33A
Cancer3DZNF33A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194521   
Orphanet
DisGeNETZNF33A
MedgenZNF33A
Genetic Testing Registry ZNF33A
NextProtQ06730 [Medical]
TSGene7581
GENETestsZNF33A
Target ValidationZNF33A
Huge Navigator ZNF33A [HugePedia]
snp3D : Map Gene to Disease7581
BioCentury BCIQZNF33A
ClinGenZNF33A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7581
Chemical/Pharm GKB GenePA37671
Clinical trialZNF33A
Miscellaneous
canSAR (ICR)ZNF33A (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF33A
EVEXZNF33A
GoPubMedZNF33A
iHOPZNF33A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:22:52 CET 2017

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