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ZNF33B (zinc finger protein 33B)

Identity

Alias_namesZNF11B
zinc finger protein 33b (KOX 31)
zinc finger protein 11B
Alias_symbol (synonym)KOX31
KOX2
Other alias
HGNC (Hugo) ZNF33B
LocusID (NCBI) 7582
Atlas_Id 76107
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 42589084 and ends at 42638837 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF33B   13097
Cards
Entrez_Gene (NCBI)ZNF33B  7582  zinc finger protein 33B
AliasesKOX2; KOX31; ZNF11B
GeneCards (Weizmann)ZNF33B
Ensembl hg19 (Hinxton)ENSG00000196693 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196693 [Gene_View]  chr10:42589084-42638837 [Contig_View]  ZNF33B [Vega]
ICGC DataPortalENSG00000196693
TCGA cBioPortalZNF33B
AceView (NCBI)ZNF33B
Genatlas (Paris)ZNF33B
WikiGenes7582
SOURCE (Princeton)ZNF33B
Genetics Home Reference (NIH)ZNF33B
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF33B  -     chr10:42589084-42638837 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF33B  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblZNF33B - 10q11.21 [CytoView hg19]  ZNF33B - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIZNF33B [Mapview hg19]  ZNF33B [Mapview hg38]
OMIM194522   
Gene and transcription
Genbank (Entrez)AF222749 AJ491697 AK025638 AK096683 AK304306
RefSeq transcript (Entrez)NM_001305033 NM_001305035 NM_001305036 NM_001305037 NM_001305038 NM_001305039 NM_001305040 NM_006955
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF33B
Cluster EST : UnigeneHs.732284 [ NCBI ]
CGAP (NCI)Hs.732284
Alternative Splicing GalleryENSG00000196693
Gene ExpressionZNF33B [ NCBI-GEO ]   ZNF33B [ EBI - ARRAY_EXPRESS ]   ZNF33B [ SEEK ]   ZNF33B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF33B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7582
GTEX Portal (Tissue expression)ZNF33B
Human Protein AtlasENSG00000196693-ZNF33B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ06732   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ06732  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ06732
Splice isoforms : SwissVarQ06732
PhosPhoSitePlusQ06732
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF33B
DMDM Disease mutations7582
Blocks (Seattle)ZNF33B
SuperfamilyQ06732
Human Protein Atlas [tissue]ENSG00000196693-ZNF33B [tissue]
Peptide AtlasQ06732
HPRD01912
IPIIPI00168604   IPI00942182   IPI00930172   IPI00439884   IPI00386200   
Protein Interaction databases
DIP (DOE-UCLA)Q06732
IntAct (EBI)Q06732
FunCoupENSG00000196693
BioGRIDZNF33B
STRING (EMBL)ZNF33B
ZODIACZNF33B
Ontologies - Pathways
QuickGOQ06732
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF33B
Atlas of Cancer Signalling NetworkZNF33B
Wikipedia pathwaysZNF33B
Orthology - Evolution
OrthoDB7582
GeneTree (enSembl)ENSG00000196693
Phylogenetic Trees/Animal Genes : TreeFamZNF33B
HOVERGENQ06732
HOGENOMQ06732
Homologs : HomoloGeneZNF33B
Homology/Alignments : Family Browser (UCSC)ZNF33B
Gene fusions - Rearrangements
Tumor Fusion PortalZNF33B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF33B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF33B
dbVarZNF33B
ClinVarZNF33B
1000_GenomesZNF33B 
Exome Variant ServerZNF33B
ExAC (Exome Aggregation Consortium)ENSG00000196693
GNOMAD BrowserENSG00000196693
Genetic variants : HAPMAP7582
Genomic Variants (DGV)ZNF33B [DGVbeta]
DECIPHERZNF33B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF33B 
Mutations
ICGC Data PortalZNF33B 
TCGA Data PortalZNF33B 
Broad Tumor PortalZNF33B
OASIS PortalZNF33B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF33B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF33B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF33B
DgiDB (Drug Gene Interaction Database)ZNF33B
DoCM (Curated mutations)ZNF33B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF33B (select a term)
intoGenZNF33B
Cancer3DZNF33B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194522   
Orphanet
DisGeNETZNF33B
MedgenZNF33B
Genetic Testing Registry ZNF33B
NextProtQ06732 [Medical]
TSGene7582
GENETestsZNF33B
Target ValidationZNF33B
Huge Navigator ZNF33B [HugePedia]
snp3D : Map Gene to Disease7582
BioCentury BCIQZNF33B
ClinGenZNF33B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7582
Chemical/Pharm GKB GenePA37672
Clinical trialZNF33B
Miscellaneous
canSAR (ICR)ZNF33B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF33B
EVEXZNF33B
GoPubMedZNF33B
iHOPZNF33B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:22:52 CET 2017

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