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ZNF34 (zinc finger protein 34)

Identity

Alias_nameszinc finger protein 34 (KOX 32)
Alias_symbol (synonym)KOX32
Other alias
HGNC (Hugo) ZNF34
LocusID (NCBI) 80778
Atlas_Id 76109
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 144772224 and ends at 144787345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF34   13098
Cards
Entrez_Gene (NCBI)ZNF34  80778  zinc finger protein 34
AliasesKOX32
GeneCards (Weizmann)ZNF34
Ensembl hg19 (Hinxton)ENSG00000196378 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196378 [Gene_View]  chr8:144772224-144787345 [Contig_View]  ZNF34 [Vega]
ICGC DataPortalENSG00000196378
TCGA cBioPortalZNF34
AceView (NCBI)ZNF34
Genatlas (Paris)ZNF34
WikiGenes80778
SOURCE (Princeton)ZNF34
Genetics Home Reference (NIH)ZNF34
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF34  -     chr8:144772224-144787345 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF34  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblZNF34 - 8q24.3 [CytoView hg19]  ZNF34 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIZNF34 [Mapview hg19]  ZNF34 [Mapview hg38]
OMIM194526   
Gene and transcription
Genbank (Entrez)AF086227 AK096508 AL833814 AM392828 BC004480
RefSeq transcript (Entrez)NM_001286769 NM_001286770 NM_030580
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF34
Cluster EST : UnigeneHs.631854 [ NCBI ]
CGAP (NCI)Hs.631854
Alternative Splicing GalleryENSG00000196378
Gene ExpressionZNF34 [ NCBI-GEO ]   ZNF34 [ EBI - ARRAY_EXPRESS ]   ZNF34 [ SEEK ]   ZNF34 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF34 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80778
GTEX Portal (Tissue expression)ZNF34
Human Protein AtlasENSG00000196378-ZNF34 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZ26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZ26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZ26
Splice isoforms : SwissVarQ8IZ26
PhosPhoSitePlusQ8IZ26
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF34
DMDM Disease mutations80778
Blocks (Seattle)ZNF34
SuperfamilyQ8IZ26
Human Protein Atlas [tissue]ENSG00000196378-ZNF34 [tissue]
Peptide AtlasQ8IZ26
HPRD11772
IPIIPI00941417   IPI00903000   IPI00973497   IPI01012024   IPI00980293   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZ26
IntAct (EBI)Q8IZ26
FunCoupENSG00000196378
BioGRIDZNF34
STRING (EMBL)ZNF34
ZODIACZNF34
Ontologies - Pathways
QuickGOQ8IZ26
Ontology : AmiGODNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF34
Atlas of Cancer Signalling NetworkZNF34
Wikipedia pathwaysZNF34
Orthology - Evolution
OrthoDB80778
GeneTree (enSembl)ENSG00000196378
Phylogenetic Trees/Animal Genes : TreeFamZNF34
HOVERGENQ8IZ26
HOGENOMQ8IZ26
Homologs : HomoloGeneZNF34
Homology/Alignments : Family Browser (UCSC)ZNF34
Gene fusions - Rearrangements
Tumor Fusion PortalZNF34
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF34 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF34
dbVarZNF34
ClinVarZNF34
1000_GenomesZNF34 
Exome Variant ServerZNF34
ExAC (Exome Aggregation Consortium)ENSG00000196378
GNOMAD BrowserENSG00000196378
Genetic variants : HAPMAP80778
Genomic Variants (DGV)ZNF34 [DGVbeta]
DECIPHERZNF34 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF34 
Mutations
ICGC Data PortalZNF34 
TCGA Data PortalZNF34 
Broad Tumor PortalZNF34
OASIS PortalZNF34 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF34  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF34
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF34
DgiDB (Drug Gene Interaction Database)ZNF34
DoCM (Curated mutations)ZNF34 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF34 (select a term)
intoGenZNF34
Cancer3DZNF34(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194526   
Orphanet
DisGeNETZNF34
MedgenZNF34
Genetic Testing Registry ZNF34
NextProtQ8IZ26 [Medical]
TSGene80778
GENETestsZNF34
Target ValidationZNF34
Huge Navigator ZNF34 [HugePedia]
snp3D : Map Gene to Disease80778
BioCentury BCIQZNF34
ClinGenZNF34
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80778
Chemical/Pharm GKB GenePA37673
Clinical trialZNF34
Miscellaneous
canSAR (ICR)ZNF34 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF34
EVEXZNF34
GoPubMedZNF34
iHOPZNF34
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:14 CET 2017

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