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ZNF341 (zinc finger protein 341)

Identity

Alias_symbol (synonym)dJ553F4.3
Other alias-
HGNC (Hugo) ZNF341
LocusID (NCBI) 84905
Atlas_Id 76110
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 33731760 and ends at 33792269 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SLC3A1 (2p21) / ZNF341 (20q11.22)ZNF341 (20q11.22) / CBFA2T2 (20q11.21)ZNF341 (20q11.22) / TTLL9 (20q11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF341   15992
Cards
Entrez_Gene (NCBI)ZNF341  84905  zinc finger protein 341
Aliases
GeneCards (Weizmann)ZNF341
Ensembl hg19 (Hinxton)ENSG00000131061 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131061 [Gene_View]  chr20:33731760-33792269 [Contig_View]  ZNF341 [Vega]
ICGC DataPortalENSG00000131061
TCGA cBioPortalZNF341
AceView (NCBI)ZNF341
Genatlas (Paris)ZNF341
WikiGenes84905
SOURCE (Princeton)ZNF341
Genetics Home Reference (NIH)ZNF341
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF341  -     chr20:33731760-33792269 +  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF341  -     20q11.22   [Description]    (hg19-Feb_2009)
EnsemblZNF341 - 20q11.22 [CytoView hg19]  ZNF341 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIZNF341 [Mapview hg19]  ZNF341 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027550 AK095848 AK096755 AK122943 BC040440
RefSeq transcript (Entrez)NM_001282933 NM_001282935 NM_032819
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF341
Cluster EST : UnigeneHs.516989 [ NCBI ]
CGAP (NCI)Hs.516989
Alternative Splicing GalleryENSG00000131061
Gene ExpressionZNF341 [ NCBI-GEO ]   ZNF341 [ EBI - ARRAY_EXPRESS ]   ZNF341 [ SEEK ]   ZNF341 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF341 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84905
GTEX Portal (Tissue expression)ZNF341
Human Protein AtlasENSG00000131061-ZNF341 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYN7
Splice isoforms : SwissVarQ9BYN7
PhosPhoSitePlusQ9BYN7
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF341
DMDM Disease mutations84905
Blocks (Seattle)ZNF341
SuperfamilyQ9BYN7
Human Protein Atlas [tissue]ENSG00000131061-ZNF341 [tissue]
Peptide AtlasQ9BYN7
HPRD15781
IPIIPI00001008   IPI00743800   IPI00985396   IPI00975514   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYN7
IntAct (EBI)Q9BYN7
FunCoupENSG00000131061
BioGRIDZNF341
STRING (EMBL)ZNF341
ZODIACZNF341
Ontologies - Pathways
QuickGOQ9BYN7
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF341
Atlas of Cancer Signalling NetworkZNF341
Wikipedia pathwaysZNF341
Orthology - Evolution
OrthoDB84905
GeneTree (enSembl)ENSG00000131061
Phylogenetic Trees/Animal Genes : TreeFamZNF341
HOVERGENQ9BYN7
HOGENOMQ9BYN7
Homologs : HomoloGeneZNF341
Homology/Alignments : Family Browser (UCSC)ZNF341
Gene fusions - Rearrangements
Tumor Fusion PortalZNF341
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF341 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF341
dbVarZNF341
ClinVarZNF341
1000_GenomesZNF341 
Exome Variant ServerZNF341
ExAC (Exome Aggregation Consortium)ENSG00000131061
GNOMAD BrowserENSG00000131061
Genetic variants : HAPMAP84905
Genomic Variants (DGV)ZNF341 [DGVbeta]
DECIPHERZNF341 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF341 
Mutations
ICGC Data PortalZNF341 
TCGA Data PortalZNF341 
Broad Tumor PortalZNF341
OASIS PortalZNF341 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF341  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF341
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF341
DgiDB (Drug Gene Interaction Database)ZNF341
DoCM (Curated mutations)ZNF341 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF341 (select a term)
intoGenZNF341
Cancer3DZNF341(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF341
MedgenZNF341
Genetic Testing Registry ZNF341
NextProtQ9BYN7 [Medical]
TSGene84905
GENETestsZNF341
Target ValidationZNF341
Huge Navigator ZNF341 [HugePedia]
snp3D : Map Gene to Disease84905
BioCentury BCIQZNF341
ClinGenZNF341
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84905
Chemical/Pharm GKB GenePA38076
Clinical trialZNF341
Miscellaneous
canSAR (ICR)ZNF341 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF341
EVEXZNF341
GoPubMedZNF341
iHOPZNF341
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:42:30 CET 2017

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