Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF343 (zinc finger protein 343)

Identity

Alias_symbol (synonym)MGC10715
Other aliasdJ734P14.5
HGNC (Hugo) ZNF343
LocusID (NCBI) 79175
Atlas_Id 76112
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 2462466 and ends at 2505168 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZNF343 (20p13) / NCOA6 (20q11.22)ZNF343 (20p13) / PRPSAP2 (17p11.2)ZNF343 (20p13) / SNRPB (20p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF343   16017
Cards
Entrez_Gene (NCBI)ZNF343  79175  zinc finger protein 343
AliasesdJ734P14.5
GeneCards (Weizmann)ZNF343
Ensembl hg19 (Hinxton)ENSG00000088876 [Gene_View]  chr20:2462466-2505168 [Contig_View]  ZNF343 [Vega]
Ensembl hg38 (Hinxton)ENSG00000088876 [Gene_View]  chr20:2462466-2505168 [Contig_View]  ZNF343 [Vega]
ICGC DataPortalENSG00000088876
TCGA cBioPortalZNF343
AceView (NCBI)ZNF343
Genatlas (Paris)ZNF343
WikiGenes79175
SOURCE (Princeton)ZNF343
Genetics Home Reference (NIH)ZNF343
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF343  -     chr20:2462466-2505168 -  20p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF343  -     20p13   [Description]    (hg38-Dec_2013)
EnsemblZNF343 - 20p13 [CytoView hg19]  ZNF343 - 20p13 [CytoView hg38]
Mapping of homologs : NCBIZNF343 [Mapview hg19]  ZNF343 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055734 AK096911 BC002897 BC011862 BC065009
RefSeq transcript (Entrez)NM_001282495 NM_001282496 NM_001282497 NM_001282498 NM_001282499 NM_024325
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)ZNF343
Cluster EST : UnigeneHs.516846 [ NCBI ]
CGAP (NCI)Hs.516846
Alternative Splicing GalleryENSG00000088876
Gene ExpressionZNF343 [ NCBI-GEO ]   ZNF343 [ EBI - ARRAY_EXPRESS ]   ZNF343 [ SEEK ]   ZNF343 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF343 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79175
GTEX Portal (Tissue expression)ZNF343
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1L6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1L6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1L6
Splice isoforms : SwissVarQ6P1L6
PhosPhoSitePlusQ6P1L6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF343
DMDM Disease mutations79175
Blocks (Seattle)ZNF343
SuperfamilyQ6P1L6
Human Protein AtlasENSG00000088876
Peptide AtlasQ6P1L6
HPRD18327
IPIIPI00171188   IPI00654817   IPI00013618   IPI01012869   IPI00646593   
Protein Interaction databases
DIP (DOE-UCLA)Q6P1L6
IntAct (EBI)Q6P1L6
FunCoupENSG00000088876
BioGRIDZNF343
STRING (EMBL)ZNF343
ZODIACZNF343
Ontologies - Pathways
QuickGOQ6P1L6
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF343
Atlas of Cancer Signalling NetworkZNF343
Wikipedia pathwaysZNF343
Orthology - Evolution
OrthoDB79175
GeneTree (enSembl)ENSG00000088876
Phylogenetic Trees/Animal Genes : TreeFamZNF343
HOVERGENQ6P1L6
HOGENOMQ6P1L6
Homologs : HomoloGeneZNF343
Homology/Alignments : Family Browser (UCSC)ZNF343
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF343 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF343
dbVarZNF343
ClinVarZNF343
1000_GenomesZNF343 
Exome Variant ServerZNF343
ExAC (Exome Aggregation Consortium)ZNF343 (select the gene name)
Genetic variants : HAPMAP79175
Genomic Variants (DGV)ZNF343 [DGVbeta]
DECIPHER (Syndromes)20:2462466-2505168  ENSG00000088876
CONAN: Copy Number AnalysisZNF343 
Mutations
ICGC Data PortalZNF343 
TCGA Data PortalZNF343 
Broad Tumor PortalZNF343
OASIS PortalZNF343 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF343  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF343
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF343
DgiDB (Drug Gene Interaction Database)ZNF343
DoCM (Curated mutations)ZNF343 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF343 (select a term)
intoGenZNF343
Cancer3DZNF343(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF343
Genetic Testing Registry ZNF343
NextProtQ6P1L6 [Medical]
TSGene79175
GENETestsZNF343
Huge Navigator ZNF343 [HugePedia]
snp3D : Map Gene to Disease79175
BioCentury BCIQZNF343
ClinGenZNF343
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79175
Chemical/Pharm GKB GenePA38081
Clinical trialZNF343
Miscellaneous
canSAR (ICR)ZNF343 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF343
EVEXZNF343
GoPubMedZNF343
iHOPZNF343
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:54 CET 2017

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