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ZNF345 (zinc finger protein 345)

Identity

Alias_symbol (synonym)HZF10
Other alias
HGNC (Hugo) ZNF345
LocusID (NCBI) 25850
Atlas_Id 76113
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36850876 and ends at 36879575 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF345 (19q13.12) / HSF2BP (21q22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF345   16367
Cards
Entrez_Gene (NCBI)ZNF345  25850  zinc finger protein 345
AliasesHZF10
GeneCards (Weizmann)ZNF345
Ensembl hg19 (Hinxton)ENSG00000251247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251247 [Gene_View]  chr19:36850876-36879575 [Contig_View]  ZNF345 [Vega]
ICGC DataPortalENSG00000251247
TCGA cBioPortalZNF345
AceView (NCBI)ZNF345
Genatlas (Paris)ZNF345
WikiGenes25850
SOURCE (Princeton)ZNF345
Genetics Home Reference (NIH)ZNF345
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF345  -     chr19:36850876-36879575 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF345  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF345 - 19q13.12 [CytoView hg19]  ZNF345 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF345 [Mapview hg19]  ZNF345 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK094146 AK297516 AK315069 BC010386 BC032863
RefSeq transcript (Entrez)NM_001242472 NM_001242474 NM_001242475 NM_001242476 NM_003419
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF345
Cluster EST : UnigeneHs.362324 [ NCBI ]
CGAP (NCI)Hs.362324
Alternative Splicing GalleryENSG00000251247
Gene ExpressionZNF345 [ NCBI-GEO ]   ZNF345 [ EBI - ARRAY_EXPRESS ]   ZNF345 [ SEEK ]   ZNF345 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF345 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25850
GTEX Portal (Tissue expression)ZNF345
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14585   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14585  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14585
Splice isoforms : SwissVarQ14585
PhosPhoSitePlusQ14585
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)    zf-H2C2_2 (PF13465)   
Domain families : Pfam (NCBI)pfam00096    pfam13912    pfam13465   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF345
DMDM Disease mutations25850
Blocks (Seattle)ZNF345
SuperfamilyQ14585
Human Protein AtlasENSG00000251247
Peptide AtlasQ14585
HPRD10330
IPIIPI00031592   IPI01009206   IPI00978864   IPI00747721   
Protein Interaction databases
DIP (DOE-UCLA)Q14585
IntAct (EBI)Q14585
FunCoupENSG00000251247
BioGRIDZNF345
STRING (EMBL)ZNF345
ZODIACZNF345
Ontologies - Pathways
QuickGOQ14585
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription from RNA polymerase III promoter  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  regulation of transcription from RNA polymerase III promoter  transcription from RNA polymerase II promoter  transcription from RNA polymerase III promoter  metal ion binding  
NDEx NetworkZNF345
Atlas of Cancer Signalling NetworkZNF345
Wikipedia pathwaysZNF345
Orthology - Evolution
OrthoDB25850
GeneTree (enSembl)ENSG00000251247
Phylogenetic Trees/Animal Genes : TreeFamZNF345
HOVERGENQ14585
HOGENOMQ14585
Homologs : HomoloGeneZNF345
Homology/Alignments : Family Browser (UCSC)ZNF345
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF345 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF345
dbVarZNF345
ClinVarZNF345
1000_GenomesZNF345 
Exome Variant ServerZNF345
ExAC (Exome Aggregation Consortium)ZNF345 (select the gene name)
Genetic variants : HAPMAP25850
Genomic Variants (DGV)ZNF345 [DGVbeta]
DECIPHERZNF345 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF345 
Mutations
ICGC Data PortalZNF345 
TCGA Data PortalZNF345 
Broad Tumor PortalZNF345
OASIS PortalZNF345 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF345  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF345
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF345
DgiDB (Drug Gene Interaction Database)ZNF345
DoCM (Curated mutations)ZNF345 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF345 (select a term)
intoGenZNF345
Cancer3DZNF345(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF345
Genetic Testing Registry ZNF345
NextProtQ14585 [Medical]
TSGene25850
GENETestsZNF345
Target ValidationZNF345
Huge Navigator ZNF345 [HugePedia]
snp3D : Map Gene to Disease25850
BioCentury BCIQZNF345
ClinGenZNF345
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25850
Chemical/Pharm GKB GenePA38128
Clinical trialZNF345
Miscellaneous
canSAR (ICR)ZNF345 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF345
EVEXZNF345
GoPubMedZNF345
iHOPZNF345
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:40 CEST 2017

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