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ZNF346 (zinc finger protein 346)

Identity

Alias_symbol (synonym)JAZ
Zfp346
Other alias
HGNC (Hugo) ZNF346
LocusID (NCBI) 23567
Atlas_Id 56570
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 176449681 and ends at 176508190 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LOC100133985 (2p13.3) / ZNF346 (5q35.2)NSD1 (5q35.2) / ZNF346 (5q35.2)ZNF346 (5q35.2) / PAOX (10q26.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF346   16403
Cards
Entrez_Gene (NCBI)ZNF346  23567  zinc finger protein 346
AliasesJAZ; Zfp346
GeneCards (Weizmann)ZNF346
Ensembl hg19 (Hinxton)ENSG00000113761 [Gene_View]  chr5:176449681-176508190 [Contig_View]  ZNF346 [Vega]
Ensembl hg38 (Hinxton)ENSG00000113761 [Gene_View]  chr5:176449681-176508190 [Contig_View]  ZNF346 [Vega]
ICGC DataPortalENSG00000113761
TCGA cBioPortalZNF346
AceView (NCBI)ZNF346
Genatlas (Paris)ZNF346
WikiGenes23567
SOURCE (Princeton)ZNF346
Genetics Home Reference (NIH)ZNF346
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF346  -     chr5:176449681-176508190 +  5q35.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF346  -     5q35.2   [Description]    (hg38-Dec_2013)
EnsemblZNF346 - 5q35.2 [CytoView hg19]  ZNF346 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBIZNF346 [Mapview hg19]  ZNF346 [Mapview hg38]
OMIM605308   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001308213 NM_001308214 NM_001308215 NM_001308216 NM_001308218 NM_001308219 NM_001308221 NM_001308223 NM_012279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF346
Cluster EST : UnigeneHs.671568 [ NCBI ]
CGAP (NCI)Hs.671568
Alternative Splicing GalleryENSG00000113761
Gene ExpressionZNF346 [ NCBI-GEO ]   ZNF346 [ EBI - ARRAY_EXPRESS ]   ZNF346 [ SEEK ]   ZNF346 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF346 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23567
GTEX Portal (Tissue expression)ZNF346
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UL40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UL40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UL40
Splice isoforms : SwissVarQ9UL40
PhosPhoSitePlusQ9UL40
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_U1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZNF346
DMDM Disease mutations23567
Blocks (Seattle)ZNF346
PDB (SRS)2MKD    2MKN   
PDB (PDBSum)2MKD    2MKN   
PDB (IMB)2MKD    2MKN   
PDB (RSDB)2MKD    2MKN   
Structural Biology KnowledgeBase2MKD    2MKN   
SCOP (Structural Classification of Proteins)2MKD    2MKN   
CATH (Classification of proteins structures)2MKD    2MKN   
SuperfamilyQ9UL40
Human Protein AtlasENSG00000113761
Peptide AtlasQ9UL40
HPRD05606
IPIIPI00550375   IPI00442165   IPI00922210   IPI00922384   IPI00922764   IPI00964370   IPI00967687   IPI00922372   
Protein Interaction databases
DIP (DOE-UCLA)Q9UL40
IntAct (EBI)Q9UL40
FunCoupENSG00000113761
BioGRIDZNF346
STRING (EMBL)ZNF346
ZODIACZNF346
Ontologies - Pathways
QuickGOQ9UL40
Ontology : AmiGOp53 binding  double-stranded RNA binding  nucleus  nucleolus  cytoplasm  zinc ion binding  enzyme binding  positive regulation of apoptotic process  poly(A) RNA binding  intrinsic apoptotic signaling pathway by p53 class mediator  
Ontology : EGO-EBIp53 binding  double-stranded RNA binding  nucleus  nucleolus  cytoplasm  zinc ion binding  enzyme binding  positive regulation of apoptotic process  poly(A) RNA binding  intrinsic apoptotic signaling pathway by p53 class mediator  
NDEx NetworkZNF346
Atlas of Cancer Signalling NetworkZNF346
Wikipedia pathwaysZNF346
Orthology - Evolution
OrthoDB23567
GeneTree (enSembl)ENSG00000113761
Phylogenetic Trees/Animal Genes : TreeFamZNF346
HOVERGENQ9UL40
HOGENOMQ9UL40
Homologs : HomoloGeneZNF346
Homology/Alignments : Family Browser (UCSC)ZNF346
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF346 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF346
dbVarZNF346
ClinVarZNF346
1000_GenomesZNF346 
Exome Variant ServerZNF346
ExAC (Exome Aggregation Consortium)ZNF346 (select the gene name)
Genetic variants : HAPMAP23567
Genomic Variants (DGV)ZNF346 [DGVbeta]
DECIPHER (Syndromes)5:176449681-176508190  ENSG00000113761
CONAN: Copy Number AnalysisZNF346 
Mutations
ICGC Data PortalZNF346 
TCGA Data PortalZNF346 
Broad Tumor PortalZNF346
OASIS PortalZNF346 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF346  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF346
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF346
DgiDB (Drug Gene Interaction Database)ZNF346
DoCM (Curated mutations)ZNF346 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF346 (select a term)
intoGenZNF346
Cancer3DZNF346(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605308   
Orphanet
MedgenZNF346
Genetic Testing Registry ZNF346
NextProtQ9UL40 [Medical]
TSGene23567
GENETestsZNF346
Huge Navigator ZNF346 [HugePedia]
snp3D : Map Gene to Disease23567
BioCentury BCIQZNF346
ClinGenZNF346
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23567
Chemical/Pharm GKB GenePA134898181
Clinical trialZNF346
Miscellaneous
canSAR (ICR)ZNF346 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF346
EVEXZNF346
GoPubMedZNF346
iHOPZNF346
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:45 CEST 2017

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