Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZNF35 (zinc finger protein 35)

Identity

Alias_nameszinc finger protein 35 (clone HF.10)
Alias_symbol (synonym)HF.10
HF10
Zfp105
Other alias
HGNC (Hugo) ZNF35
LocusID (NCBI) 7584
Atlas_Id 76116
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44690233 and ends at 44702283 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NMB (15q25.2) / ZNF35 (3p21.31)ZNF35 (3p21.31) / ZNF35 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF35   13099
Cards
Entrez_Gene (NCBI)ZNF35  7584  zinc finger protein 35
AliasesHF.10; HF10; Zfp105
GeneCards (Weizmann)ZNF35
Ensembl hg19 (Hinxton)ENSG00000169981 [Gene_View]  chr3:44690233-44702283 [Contig_View]  ZNF35 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169981 [Gene_View]  chr3:44690233-44702283 [Contig_View]  ZNF35 [Vega]
ICGC DataPortalENSG00000169981
TCGA cBioPortalZNF35
AceView (NCBI)ZNF35
Genatlas (Paris)ZNF35
WikiGenes7584
SOURCE (Princeton)ZNF35
Genetics Home Reference (NIH)ZNF35
Genomic and cartography
GoldenPath hg19 (UCSC)ZNF35  -     chr3:44690233-44702283 +  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZNF35  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblZNF35 - 3p21.31 [CytoView hg19]  ZNF35 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZNF35 [Mapview hg19]  ZNF35 [Mapview hg38]
OMIM194533   
Gene and transcription
Genbank (Entrez)AK300581 AK314821 BC013597 BC015892 BP237260
RefSeq transcript (Entrez)NM_003420
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309 NW_009646197
Consensus coding sequences : CCDS (NCBI)ZNF35
Cluster EST : UnigeneHs.288658 [ NCBI ]
CGAP (NCI)Hs.288658
Alternative Splicing GalleryENSG00000169981
Gene ExpressionZNF35 [ NCBI-GEO ]   ZNF35 [ EBI - ARRAY_EXPRESS ]   ZNF35 [ SEEK ]   ZNF35 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF35 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7584
GTEX Portal (Tissue expression)ZNF35
Protein : pattern, domain, 3D structure
UniProt/SwissProtP13682   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP13682  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP13682
Splice isoforms : SwissVarP13682
PhosPhoSitePlusP13682
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF35
DMDM Disease mutations7584
Blocks (Seattle)ZNF35
SuperfamilyP13682
Human Protein AtlasENSG00000169981
Peptide AtlasP13682
HPRD01920
IPIIPI00761023   IPI01011733   IPI00925188   IPI00926551   IPI00924516   
Protein Interaction databases
DIP (DOE-UCLA)P13682
IntAct (EBI)P13682
FunCoupENSG00000169981
BioGRIDZNF35
STRING (EMBL)ZNF35
ZODIACZNF35
Ontologies - Pathways
QuickGOP13682
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  cell  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  spermatogenesis  sequence-specific DNA binding  metal ion binding  perinuclear region of cytoplasm  cellular response to retinoic acid  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  cell  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  spermatogenesis  sequence-specific DNA binding  metal ion binding  perinuclear region of cytoplasm  cellular response to retinoic acid  
NDEx NetworkZNF35
Atlas of Cancer Signalling NetworkZNF35
Wikipedia pathwaysZNF35
Orthology - Evolution
OrthoDB7584
GeneTree (enSembl)ENSG00000169981
Phylogenetic Trees/Animal Genes : TreeFamZNF35
HOVERGENP13682
HOGENOMP13682
Homologs : HomoloGeneZNF35
Homology/Alignments : Family Browser (UCSC)ZNF35
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF35 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF35
dbVarZNF35
ClinVarZNF35
1000_GenomesZNF35 
Exome Variant ServerZNF35
ExAC (Exome Aggregation Consortium)ZNF35 (select the gene name)
Genetic variants : HAPMAP7584
Genomic Variants (DGV)ZNF35 [DGVbeta]
DECIPHER (Syndromes)3:44690233-44702283  ENSG00000169981
CONAN: Copy Number AnalysisZNF35 
Mutations
ICGC Data PortalZNF35 
TCGA Data PortalZNF35 
Broad Tumor PortalZNF35
OASIS PortalZNF35 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF35  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF35
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF35
DgiDB (Drug Gene Interaction Database)ZNF35
DoCM (Curated mutations)ZNF35 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF35 (select a term)
intoGenZNF35
Cancer3DZNF35(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194533   
Orphanet
MedgenZNF35
Genetic Testing Registry ZNF35
NextProtP13682 [Medical]
TSGene7584
GENETestsZNF35
Huge Navigator ZNF35 [HugePedia]
snp3D : Map Gene to Disease7584
BioCentury BCIQZNF35
ClinGenZNF35
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7584
Chemical/Pharm GKB GenePA37674
Clinical trialZNF35
Miscellaneous
canSAR (ICR)ZNF35 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF35
EVEXZNF35
GoPubMedZNF35
iHOPZNF35
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:55 CET 2017

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