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ZNF350 (zinc finger protein 350)

Identity

Alias_symbol (synonym)ZBRK1
ZFQR
Other alias
HGNC (Hugo) ZNF350
LocusID (NCBI) 59348
Atlas_Id 42880
Location 19q13.41  [Link to chromosome band 19q13]
Location_base_pair Starts at 51964340 and ends at 51986826 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF350 (19q13.41) / SLC12A5 (20q13.12)ZNF350 19q13.41 / SLC12A5 20q13.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF350   16656
Cards
Entrez_Gene (NCBI)ZNF350  59348  zinc finger protein 350
AliasesZBRK1; ZFQR
GeneCards (Weizmann)ZNF350
Ensembl hg19 (Hinxton)ENSG00000256683 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256683 [Gene_View]  chr19:51964340-51986826 [Contig_View]  ZNF350 [Vega]
ICGC DataPortalENSG00000256683
TCGA cBioPortalZNF350
AceView (NCBI)ZNF350
Genatlas (Paris)ZNF350
WikiGenes59348
SOURCE (Princeton)ZNF350
Genetics Home Reference (NIH)ZNF350
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF350  -     chr19:51964340-51986826 -  19q13.41   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF350  -     19q13.41   [Description]    (hg19-Feb_2009)
EnsemblZNF350 - 19q13.41 [CytoView hg19]  ZNF350 - 19q13.41 [CytoView hg38]
Mapping of homologs : NCBIZNF350 [Mapview hg19]  ZNF350 [Mapview hg38]
OMIM605422   
Gene and transcription
Genbank (Entrez)AF295096 AF309561 AK021864 AK023467 AU135269
RefSeq transcript (Entrez)NM_021632
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF350
Cluster EST : UnigeneHs.407694 [ NCBI ]
CGAP (NCI)Hs.407694
Alternative Splicing GalleryENSG00000256683
Gene ExpressionZNF350 [ NCBI-GEO ]   ZNF350 [ EBI - ARRAY_EXPRESS ]   ZNF350 [ SEEK ]   ZNF350 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF350 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59348
GTEX Portal (Tissue expression)ZNF350
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZX5
Splice isoforms : SwissVarQ9GZX5
PhosPhoSitePlusQ9GZX5
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF350
DMDM Disease mutations59348
Blocks (Seattle)ZNF350
SuperfamilyQ9GZX5
Human Protein AtlasENSG00000256683
Peptide AtlasQ9GZX5
HPRD05663
IPIIPI00478374   IPI01010405   IPI00971065   IPI01009974   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZX5
IntAct (EBI)Q9GZX5
FunCoupENSG00000256683
BioGRIDZNF350
STRING (EMBL)ZNF350
ZODIACZNF350
Ontologies - Pathways
QuickGOQ9GZX5
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  DNA binding  protein binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear matrix  nuclear body  transcriptional repressor complex  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  DNA binding  protein binding  nucleus  nucleoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear matrix  nuclear body  transcriptional repressor complex  negative regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkZNF350
Atlas of Cancer Signalling NetworkZNF350
Wikipedia pathwaysZNF350
Orthology - Evolution
OrthoDB59348
GeneTree (enSembl)ENSG00000256683
Phylogenetic Trees/Animal Genes : TreeFamZNF350
HOVERGENQ9GZX5
HOGENOMQ9GZX5
Homologs : HomoloGeneZNF350
Homology/Alignments : Family Browser (UCSC)ZNF350
Gene fusions - Rearrangements
Fusion : MitelmanZNF350/SLC12A5 [19q13.41/20q13.12]  
Fusion: TCGAZNF350 19q13.41 SLC12A5 20q13.12 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF350 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF350
dbVarZNF350
ClinVarZNF350
1000_GenomesZNF350 
Exome Variant ServerZNF350
ExAC (Exome Aggregation Consortium)ZNF350 (select the gene name)
Genetic variants : HAPMAP59348
Genomic Variants (DGV)ZNF350 [DGVbeta]
DECIPHERZNF350 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF350 
Mutations
ICGC Data PortalZNF350 
TCGA Data PortalZNF350 
Broad Tumor PortalZNF350
OASIS PortalZNF350 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF350  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF350
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF350
DgiDB (Drug Gene Interaction Database)ZNF350
DoCM (Curated mutations)ZNF350 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF350 (select a term)
intoGenZNF350
Cancer3DZNF350(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605422   
Orphanet
MedgenZNF350
Genetic Testing Registry ZNF350
NextProtQ9GZX5 [Medical]
TSGene59348
GENETestsZNF350
Target ValidationZNF350
Huge Navigator ZNF350 [HugePedia]
snp3D : Map Gene to Disease59348
BioCentury BCIQZNF350
ClinGenZNF350
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59348
Chemical/Pharm GKB GenePA134972827
Clinical trialZNF350
Miscellaneous
canSAR (ICR)ZNF350 (select the gene name)
Probes
Litterature
PubMed47 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF350
EVEXZNF350
GoPubMedZNF350
iHOPZNF350
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:45 CEST 2017

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