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ZNF354A (zinc finger protein 354A)

Identity

Alias_namesTCF17
Alias_symbol (synonym)KID-1
EZNF
HKL1
KID1
Other aliasHEL104
HGNC (Hugo) ZNF354A
LocusID (NCBI) 6940
Atlas_Id 76118
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 178711521 and ends at 178730702 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF354A (5q35.3) / SLC12A7 (5p15.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF354A   11628
Cards
Entrez_Gene (NCBI)ZNF354A  6940  zinc finger protein 354A
AliasesEZNF; HEL104; HKL1; KID-1; 
KID1; TCF17
GeneCards (Weizmann)ZNF354A
Ensembl hg19 (Hinxton)ENSG00000169131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169131 [Gene_View]  chr5:178711521-178730702 [Contig_View]  ZNF354A [Vega]
ICGC DataPortalENSG00000169131
TCGA cBioPortalZNF354A
AceView (NCBI)ZNF354A
Genatlas (Paris)ZNF354A
WikiGenes6940
SOURCE (Princeton)ZNF354A
Genetics Home Reference (NIH)ZNF354A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF354A  -     chr5:178711521-178730702 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF354A  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblZNF354A - 5q35.3 [CytoView hg19]  ZNF354A - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIZNF354A [Mapview hg19]  ZNF354A [Mapview hg38]
OMIM602444   
Gene and transcription
Genbank (Entrez)AF116030 AK290711 BC036517 BC047105 BU685427
RefSeq transcript (Entrez)NM_001324339 NM_005649
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF354A
Cluster EST : UnigeneHs.484324 [ NCBI ]
CGAP (NCI)Hs.484324
Alternative Splicing GalleryENSG00000169131
Gene ExpressionZNF354A [ NCBI-GEO ]   ZNF354A [ EBI - ARRAY_EXPRESS ]   ZNF354A [ SEEK ]   ZNF354A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF354A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6940
GTEX Portal (Tissue expression)ZNF354A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60765   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60765  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60765
Splice isoforms : SwissVarO60765
PhosPhoSitePlusO60765
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    ZNF354A/B    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_11 (PF16622)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam16622    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF354A
DMDM Disease mutations6940
Blocks (Seattle)ZNF354A
SuperfamilyO60765
Human Protein AtlasENSG00000169131
Peptide AtlasO60765
HPRD03900
IPIIPI00031589   IPI00976509   IPI00974028   
Protein Interaction databases
DIP (DOE-UCLA)O60765
IntAct (EBI)O60765
FunCoupENSG00000169131
BioGRIDZNF354A
STRING (EMBL)ZNF354A
ZODIACZNF354A
Ontologies - Pathways
QuickGOO60765
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  response to hypoxia  kidney development  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleolus  cytosol  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  nucleolar fragmentation  sensory perception of sound  metal ion binding  response to folic acid  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  response to hypoxia  kidney development  DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleolus  cytosol  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  nucleolar fragmentation  sensory perception of sound  metal ion binding  response to folic acid  
NDEx NetworkZNF354A
Atlas of Cancer Signalling NetworkZNF354A
Wikipedia pathwaysZNF354A
Orthology - Evolution
OrthoDB6940
GeneTree (enSembl)ENSG00000169131
Phylogenetic Trees/Animal Genes : TreeFamZNF354A
HOVERGENO60765
HOGENOMO60765
Homologs : HomoloGeneZNF354A
Homology/Alignments : Family Browser (UCSC)ZNF354A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF354A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF354A
dbVarZNF354A
ClinVarZNF354A
1000_GenomesZNF354A 
Exome Variant ServerZNF354A
ExAC (Exome Aggregation Consortium)ZNF354A (select the gene name)
Genetic variants : HAPMAP6940
Genomic Variants (DGV)ZNF354A [DGVbeta]
DECIPHERZNF354A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF354A 
Mutations
ICGC Data PortalZNF354A 
TCGA Data PortalZNF354A 
Broad Tumor PortalZNF354A
OASIS PortalZNF354A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF354A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF354A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF354A
DgiDB (Drug Gene Interaction Database)ZNF354A
DoCM (Curated mutations)ZNF354A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF354A (select a term)
intoGenZNF354A
Cancer3DZNF354A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602444   
Orphanet
MedgenZNF354A
Genetic Testing Registry ZNF354A
NextProtO60765 [Medical]
TSGene6940
GENETestsZNF354A
Target ValidationZNF354A
Huge Navigator ZNF354A [HugePedia]
snp3D : Map Gene to Disease6940
BioCentury BCIQZNF354A
ClinGenZNF354A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6940
Chemical/Pharm GKB GenePA36383
Clinical trialZNF354A
Miscellaneous
canSAR (ICR)ZNF354A (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF354A
EVEXZNF354A
GoPubMedZNF354A
iHOPZNF354A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:19 CEST 2017

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