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ZNF354A (zinc finger protein 354A)

Identity

Alias (NCBI)EZNF
HEL104
HKL1
KID-1
KID1
TCF17
HGNC (Hugo) ZNF354A
HGNC Alias symbKID-1
EZNF
HKL1
KID1
HGNC Previous nameTCF17
LocusID (NCBI) 6940
Atlas_Id 76118
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 178711515 and ends at 178730659 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF354A (5q35.3) / SLC12A7 (5p15.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZNF354A   11628
Cards
Entrez_Gene (NCBI)ZNF354A    zinc finger protein 354A
AliasesEZNF; HEL104; HKL1; KID-1; 
KID1; TCF17
GeneCards (Weizmann)ZNF354A
Ensembl hg19 (Hinxton)ENSG00000169131 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169131 [Gene_View]  ENSG00000169131 [Sequence]  chr5:178711515-178730659 [Contig_View]  ZNF354A [Vega]
ICGC DataPortalENSG00000169131
TCGA cBioPortalZNF354A
AceView (NCBI)ZNF354A
Genatlas (Paris)ZNF354A
SOURCE (Princeton)ZNF354A
Genetics Home Reference (NIH)ZNF354A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF354A  -     chr5:178711515-178730659 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF354A  -     5q35.3   [Description]    (hg19-Feb_2009)
GoldenPathZNF354A - 5q35.3 [CytoView hg19]  ZNF354A - 5q35.3 [CytoView hg38]
ImmunoBaseENSG00000169131
Genome Data Viewer NCBIZNF354A [Mapview hg19]  
OMIM602444   
Gene and transcription
Genbank (Entrez)AF116030 AK290711 BC036517 BC047105 BU685427
RefSeq transcript (Entrez)NM_001324339 NM_005649
Consensus coding sequences : CCDS (NCBI)ZNF354A
Gene ExpressionZNF354A [ NCBI-GEO ]   ZNF354A [ EBI - ARRAY_EXPRESS ]   ZNF354A [ SEEK ]   ZNF354A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF354A [ Firebrowse - Broad ]
GenevisibleExpression of ZNF354A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6940
GTEX Portal (Tissue expression)ZNF354A
Human Protein AtlasENSG00000169131-ZNF354A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60765   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60765  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60765
PhosPhoSitePlusO60765
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf-C2H2_11    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_11 (PF16622)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam16622   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF354A
SuperfamilyO60765
AlphaFold pdb e-kbO60765   
Human Protein Atlas [tissue]ENSG00000169131-ZNF354A [tissue]
HPRD03900
Protein Interaction databases
DIP (DOE-UCLA)O60765
IntAct (EBI)O60765
BioGRIDZNF354A
STRING (EMBL)ZNF354A
ZODIACZNF354A
Ontologies - Pathways
QuickGOO60765
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  nucleus  nucleus  nucleoplasm  nucleolus  cytosol  regulation of transcription by RNA polymerase II  sensory perception of sound  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  nucleus  nucleus  nucleoplasm  nucleolus  cytosol  regulation of transcription by RNA polymerase II  sensory perception of sound  metal ion binding  
NDEx NetworkZNF354A
Atlas of Cancer Signalling NetworkZNF354A
Wikipedia pathwaysZNF354A
Orthology - Evolution
OrthoDB6940
GeneTree (enSembl)ENSG00000169131
Phylogenetic Trees/Animal Genes : TreeFamZNF354A
Homologs : HomoloGeneZNF354A
Homology/Alignments : Family Browser (UCSC)ZNF354A
Gene fusions - Rearrangements
Fusion : QuiverZNF354A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF354A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF354A
dbVarZNF354A
ClinVarZNF354A
MonarchZNF354A
1000_GenomesZNF354A 
Exome Variant ServerZNF354A
GNOMAD BrowserENSG00000169131
Varsome BrowserZNF354A
ACMGZNF354A variants
VarityO60765
Genomic Variants (DGV)ZNF354A [DGVbeta]
DECIPHERZNF354A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF354A 
Mutations
ICGC Data PortalZNF354A 
TCGA Data PortalZNF354A 
Broad Tumor PortalZNF354A
OASIS PortalZNF354A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF354A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF354A
Mutations and Diseases : HGMDZNF354A
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF354A
DgiDB (Drug Gene Interaction Database)ZNF354A
DoCM (Curated mutations)ZNF354A
CIViC (Clinical Interpretations of Variants in Cancer)ZNF354A
Cancer3DZNF354A
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602444   
Orphanet
DisGeNETZNF354A
MedgenZNF354A
Genetic Testing Registry ZNF354A
NextProtO60765 [Medical]
GENETestsZNF354A
Target ValidationZNF354A
Huge Navigator ZNF354A [HugePedia]
ClinGenZNF354A
Clinical trials, drugs, therapy
MyCancerGenomeZNF354A
Protein Interactions : CTDZNF354A
Pharm GKB GenePA36383
PharosO60765
Clinical trialZNF354A
Miscellaneous
canSAR (ICR)ZNF354A
HarmonizomeZNF354A
DataMed IndexZNF354A
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF354A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:29:35 CEST 2021

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