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ZNF354B (zinc finger protein 354B)

Identity

Alias_symbol (synonym)KID2
FLJ25008
Other alias
HGNC (Hugo) ZNF354B
LocusID (NCBI) 117608
Atlas_Id 76119
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 178859953 and ends at 178884423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GUF1 (4p12) / ZNF354B (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF354B   17197
Cards
Entrez_Gene (NCBI)ZNF354B  117608  zinc finger protein 354B
AliasesKID2
GeneCards (Weizmann)ZNF354B
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:178859953-178884423 [Contig_View]  ZNF354B [Vega]
TCGA cBioPortalZNF354B
AceView (NCBI)ZNF354B
Genatlas (Paris)ZNF354B
WikiGenes117608
SOURCE (Princeton)ZNF354B
Genetics Home Reference (NIH)ZNF354B
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF354B  -     chr5:178859953-178884423 +  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF354B  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblZNF354B - 5q35.3 [CytoView hg19]  ZNF354B - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIZNF354B [Mapview hg19]  ZNF354B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA599717 AI683630 AK057737 AK289667 BC022190
RefSeq transcript (Entrez)NM_058230
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF354B
Cluster EST : UnigeneHs.724051 [ NCBI ]
CGAP (NCI)Hs.724051
Gene ExpressionZNF354B [ NCBI-GEO ]   ZNF354B [ EBI - ARRAY_EXPRESS ]   ZNF354B [ SEEK ]   ZNF354B [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF354B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)117608
GTEX Portal (Tissue expression)ZNF354B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96LW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96LW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96LW1
Splice isoforms : SwissVarQ96LW1
PhosPhoSitePlusQ96LW1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    ZNF354A/B    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_11 (PF16622)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam16622    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF354B
DMDM Disease mutations117608
Blocks (Seattle)ZNF354B
SuperfamilyQ96LW1
Peptide AtlasQ96LW1
HPRD15784
IPIIPI00065351   IPI00976488   
Protein Interaction databases
DIP (DOE-UCLA)Q96LW1
IntAct (EBI)Q96LW1
BioGRIDZNF354B
STRING (EMBL)ZNF354B
ZODIACZNF354B
Ontologies - Pathways
QuickGOQ96LW1
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  chromatin binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF354B
Atlas of Cancer Signalling NetworkZNF354B
Wikipedia pathwaysZNF354B
Orthology - Evolution
OrthoDB117608
Phylogenetic Trees/Animal Genes : TreeFamZNF354B
HOVERGENQ96LW1
HOGENOMQ96LW1
Homologs : HomoloGeneZNF354B
Homology/Alignments : Family Browser (UCSC)ZNF354B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF354B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF354B
dbVarZNF354B
ClinVarZNF354B
1000_GenomesZNF354B 
Exome Variant ServerZNF354B
ExAC (Exome Aggregation Consortium)ZNF354B (select the gene name)
Genetic variants : HAPMAP117608
Genomic Variants (DGV)ZNF354B [DGVbeta]
DECIPHERZNF354B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF354B 
Mutations
ICGC Data PortalZNF354B 
TCGA Data PortalZNF354B 
Broad Tumor PortalZNF354B
OASIS PortalZNF354B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF354B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF354B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF354B
DgiDB (Drug Gene Interaction Database)ZNF354B
DoCM (Curated mutations)ZNF354B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF354B (select a term)
intoGenZNF354B
Cancer3DZNF354B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF354B
Genetic Testing Registry ZNF354B
NextProtQ96LW1 [Medical]
TSGene117608
GENETestsZNF354B
Target ValidationZNF354B
Huge Navigator ZNF354B [HugePedia]
snp3D : Map Gene to Disease117608
BioCentury BCIQZNF354B
ClinGenZNF354B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD117608
Chemical/Pharm GKB GenePA38210
Clinical trialZNF354B
Miscellaneous
canSAR (ICR)ZNF354B (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF354B
EVEXZNF354B
GoPubMedZNF354B
iHOPZNF354B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:40 CEST 2017

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