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ZNF362 (zinc finger protein 362)

Identity

Alias_symbol (synonym)FLJ25476
lin-29
RN
Other alias
HGNC (Hugo) ZNF362
LocusID (NCBI) 149076
Atlas_Id 76122
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 33256573 and ends at 33300719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FOXJ3 (1p34.2) / ZNF362 (1p35.1)GPI (19q13.11) / ZNF362 (1p35.1)ZNF362 (1p35.1) / CEP250 (20q11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF362   18079
Cards
Entrez_Gene (NCBI)ZNF362  149076  zinc finger protein 362
AliasesRN; lin-29
GeneCards (Weizmann)ZNF362
Ensembl hg19 (Hinxton)ENSG00000160094 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160094 [Gene_View]  chr1:33256573-33300719 [Contig_View]  ZNF362 [Vega]
ICGC DataPortalENSG00000160094
TCGA cBioPortalZNF362
AceView (NCBI)ZNF362
Genatlas (Paris)ZNF362
WikiGenes149076
SOURCE (Princeton)ZNF362
Genetics Home Reference (NIH)ZNF362
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF362  -     chr1:33256573-33300719 +  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF362  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblZNF362 - 1p35.1 [CytoView hg19]  ZNF362 - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIZNF362 [Mapview hg19]  ZNF362 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF318356 AK098342 AW204855 BC065039 BC071632
RefSeq transcript (Entrez)NM_152493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF362
Cluster EST : UnigeneHs.743358 [ NCBI ]
CGAP (NCI)Hs.743358
Alternative Splicing GalleryENSG00000160094
Gene ExpressionZNF362 [ NCBI-GEO ]   ZNF362 [ EBI - ARRAY_EXPRESS ]   ZNF362 [ SEEK ]   ZNF362 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF362 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149076
GTEX Portal (Tissue expression)ZNF362
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0B9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0B9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0B9
Splice isoforms : SwissVarQ5T0B9
PhosPhoSitePlusQ5T0B9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF362
DMDM Disease mutations149076
Blocks (Seattle)ZNF362
SuperfamilyQ5T0B9
Human Protein AtlasENSG00000160094
Peptide AtlasQ5T0B9
HPRD13394
IPIIPI00292433   IPI00167223   IPI01013145   
Protein Interaction databases
DIP (DOE-UCLA)Q5T0B9
IntAct (EBI)Q5T0B9
FunCoupENSG00000160094
BioGRIDZNF362
STRING (EMBL)ZNF362
ZODIACZNF362
Ontologies - Pathways
QuickGOQ5T0B9
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF362
Atlas of Cancer Signalling NetworkZNF362
Wikipedia pathwaysZNF362
Orthology - Evolution
OrthoDB149076
GeneTree (enSembl)ENSG00000160094
Phylogenetic Trees/Animal Genes : TreeFamZNF362
HOVERGENQ5T0B9
HOGENOMQ5T0B9
Homologs : HomoloGeneZNF362
Homology/Alignments : Family Browser (UCSC)ZNF362
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF362 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF362
dbVarZNF362
ClinVarZNF362
1000_GenomesZNF362 
Exome Variant ServerZNF362
ExAC (Exome Aggregation Consortium)ZNF362 (select the gene name)
Genetic variants : HAPMAP149076
Genomic Variants (DGV)ZNF362 [DGVbeta]
DECIPHERZNF362 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF362 
Mutations
ICGC Data PortalZNF362 
TCGA Data PortalZNF362 
Broad Tumor PortalZNF362
OASIS PortalZNF362 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF362  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF362
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF362
DgiDB (Drug Gene Interaction Database)ZNF362
DoCM (Curated mutations)ZNF362 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF362 (select a term)
intoGenZNF362
Cancer3DZNF362(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF362
Genetic Testing Registry ZNF362
NextProtQ5T0B9 [Medical]
TSGene149076
GENETestsZNF362
Target ValidationZNF362
Huge Navigator ZNF362 [HugePedia]
snp3D : Map Gene to Disease149076
BioCentury BCIQZNF362
ClinGenZNF362
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149076
Chemical/Pharm GKB GenePA38290
Clinical trialZNF362
Miscellaneous
canSAR (ICR)ZNF362 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF362
EVEXZNF362
GoPubMedZNF362
iHOPZNF362
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:20 CEST 2017

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