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ZNF362 (zinc finger protein 362)

Identity

Alias (NCBI)RN
lin-29
HGNC (Hugo) ZNF362
HGNC Alias symbFLJ25476
lin-29
RN
HGNC Alias namerotund homolog (Drosophila)
LocusID (NCBI) 149076
Atlas_Id 76122
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 33256492 and ends at 33300719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FOXJ3 (1p34.2) / ZNF362 (1p35.1)GPI (19q13.11) / ZNF362 (1p35.1)ZNF362 (1p35.1) / CEP250 (20q11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 4 ]
  t(1;9)(p35;p24) SMARCA2/ZNF362
t(1;9)(p35;p24) ZNF362/SMARCA2
t(1;9)(p35;p24) SMARCA2/ZNF362
t(1;9)(p35;p24) ZNF362/SMARCA2


External links

 

Nomenclature
HGNC (Hugo)ZNF362   18079
Cards
Entrez_Gene (NCBI)ZNF362    zinc finger protein 362
AliasesRN; lin-29
GeneCards (Weizmann)ZNF362
Ensembl hg19 (Hinxton)ENSG00000160094 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160094 [Gene_View]  ENSG00000160094 [Sequence]  chr1:33256492-33300719 [Contig_View]  ZNF362 [Vega]
ICGC DataPortalENSG00000160094
TCGA cBioPortalZNF362
AceView (NCBI)ZNF362
Genatlas (Paris)ZNF362
SOURCE (Princeton)ZNF362
Genetics Home Reference (NIH)ZNF362
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF362  -     chr1:33256492-33300719 +  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF362  -     1p35.1   [Description]    (hg19-Feb_2009)
GoldenPathZNF362 - 1p35.1 [CytoView hg19]  ZNF362 - 1p35.1 [CytoView hg38]
ImmunoBaseENSG00000160094
Genome Data Viewer NCBIZNF362 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF318356 AK098342 AW204855 BC065039 BC071632
RefSeq transcript (Entrez)NM_001370212 NM_152493
Consensus coding sequences : CCDS (NCBI)ZNF362
Gene ExpressionZNF362 [ NCBI-GEO ]   ZNF362 [ EBI - ARRAY_EXPRESS ]   ZNF362 [ SEEK ]   ZNF362 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF362 [ Firebrowse - Broad ]
GenevisibleExpression of ZNF362 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149076
GTEX Portal (Tissue expression)ZNF362
Human Protein AtlasENSG00000160094-ZNF362 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T0B9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T0B9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T0B9
PhosPhoSitePlusQ5T0B9
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF362
SuperfamilyQ5T0B9
AlphaFold pdb e-kbQ5T0B9   
Human Protein Atlas [tissue]ENSG00000160094-ZNF362 [tissue]
HPRD13394
Protein Interaction databases
DIP (DOE-UCLA)Q5T0B9
IntAct (EBI)Q5T0B9
BioGRIDZNF362
STRING (EMBL)ZNF362
ZODIACZNF362
Ontologies - Pathways
QuickGOQ5T0B9
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF362
Atlas of Cancer Signalling NetworkZNF362
Wikipedia pathwaysZNF362
Orthology - Evolution
OrthoDB149076
GeneTree (enSembl)ENSG00000160094
Phylogenetic Trees/Animal Genes : TreeFamZNF362
Homologs : HomoloGeneZNF362
Homology/Alignments : Family Browser (UCSC)ZNF362
Gene fusions - Rearrangements
Fusion : QuiverZNF362
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF362 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF362
dbVarZNF362
ClinVarZNF362
MonarchZNF362
1000_GenomesZNF362 
Exome Variant ServerZNF362
GNOMAD BrowserENSG00000160094
Varsome BrowserZNF362
ACMGZNF362 variants
VarityQ5T0B9
Genomic Variants (DGV)ZNF362 [DGVbeta]
DECIPHERZNF362 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF362 
Mutations
ICGC Data PortalZNF362 
TCGA Data PortalZNF362 
Broad Tumor PortalZNF362
OASIS PortalZNF362 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF362  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF362
Mutations and Diseases : HGMDZNF362
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZNF362
DgiDB (Drug Gene Interaction Database)ZNF362
DoCM (Curated mutations)ZNF362
CIViC (Clinical Interpretations of Variants in Cancer)ZNF362
Cancer3DZNF362
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF362
MedgenZNF362
Genetic Testing Registry ZNF362
NextProtQ5T0B9 [Medical]
GENETestsZNF362
Target ValidationZNF362
Huge Navigator ZNF362 [HugePedia]
ClinGenZNF362
Clinical trials, drugs, therapy
MyCancerGenomeZNF362
Protein Interactions : CTDZNF362
Pharm GKB GenePA38290
PharosQ5T0B9
Clinical trialZNF362
Miscellaneous
canSAR (ICR)ZNF362
HarmonizomeZNF362
DataMed IndexZNF362
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZNF362
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:29:36 CEST 2021

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