Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF37A (zinc finger protein 37A)

Identity

Alias_nameszinc finger protein 37a (KOX 21)
Alias_symbol (synonym)KOX21
ZNF37
Other alias
HGNC (Hugo) ZNF37A
LocusID (NCBI) 7587
Atlas_Id 76124
Location 10p11.1  [Link to chromosome band 10p11]
Location_base_pair Starts at 38094336 and ends at 38123350 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CEACAM6 (19q13.2) / ZNF37A (10p11.1)ZNF37A (10p11.1) / PIP5K1B (9q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF37A   13102
Cards
Entrez_Gene (NCBI)ZNF37A  7587  zinc finger protein 37A
AliasesKOX21; ZNF37
GeneCards (Weizmann)ZNF37A
Ensembl hg19 (Hinxton)ENSG00000075407 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000075407 [Gene_View]  chr10:38094336-38123350 [Contig_View]  ZNF37A [Vega]
ICGC DataPortalENSG00000075407
TCGA cBioPortalZNF37A
AceView (NCBI)ZNF37A
Genatlas (Paris)ZNF37A
WikiGenes7587
SOURCE (Princeton)ZNF37A
Genetics Home Reference (NIH)ZNF37A
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF37A  -     chr10:38094336-38123350 +  10p11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF37A  -     10p11.1   [Description]    (hg19-Feb_2009)
EnsemblZNF37A - 10p11.1 [CytoView hg19]  ZNF37A - 10p11.1 [CytoView hg38]
Mapping of homologs : NCBIZNF37A [Mapview hg19]  ZNF37A [Mapview hg38]
OMIM616085   
Gene and transcription
Genbank (Entrez)AA742606 AJ492195 AK092012 AK130521 AL708537
RefSeq transcript (Entrez)NM_001007094 NM_001178101 NM_001324245 NM_001324246 NM_001324247 NM_001324248 NM_001324249 NM_001324250 NM_001324251 NM_001324252 NM_001324253 NM_001324254 NM_001324256 NM_001324257 NM_001324258 NM_001324259 NM_001324260 NM_001324261 NM_001324262 NM_003421
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF37A
Cluster EST : UnigeneHs.292575 [ NCBI ]
CGAP (NCI)Hs.292575
Alternative Splicing GalleryENSG00000075407
Gene ExpressionZNF37A [ NCBI-GEO ]   ZNF37A [ EBI - ARRAY_EXPRESS ]   ZNF37A [ SEEK ]   ZNF37A [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF37A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7587
GTEX Portal (Tissue expression)ZNF37A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP17032   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP17032  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP17032
Splice isoforms : SwissVarP17032
PhosPhoSitePlusP17032
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF37A
DMDM Disease mutations7587
Blocks (Seattle)ZNF37A
SuperfamilyP17032
Human Protein AtlasENSG00000075407
Peptide AtlasP17032
HPRD18508
IPIIPI00165086   
Protein Interaction databases
DIP (DOE-UCLA)P17032
IntAct (EBI)P17032
FunCoupENSG00000075407
BioGRIDZNF37A
STRING (EMBL)ZNF37A
ZODIACZNF37A
Ontologies - Pathways
QuickGOP17032
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF37A
Atlas of Cancer Signalling NetworkZNF37A
Wikipedia pathwaysZNF37A
Orthology - Evolution
OrthoDB7587
GeneTree (enSembl)ENSG00000075407
Phylogenetic Trees/Animal Genes : TreeFamZNF37A
HOVERGENP17032
HOGENOMP17032
Homologs : HomoloGeneZNF37A
Homology/Alignments : Family Browser (UCSC)ZNF37A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF37A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF37A
dbVarZNF37A
ClinVarZNF37A
1000_GenomesZNF37A 
Exome Variant ServerZNF37A
ExAC (Exome Aggregation Consortium)ZNF37A (select the gene name)
Genetic variants : HAPMAP7587
Genomic Variants (DGV)ZNF37A [DGVbeta]
DECIPHERZNF37A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF37A 
Mutations
ICGC Data PortalZNF37A 
TCGA Data PortalZNF37A 
Broad Tumor PortalZNF37A
OASIS PortalZNF37A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF37A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF37A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF37A
DgiDB (Drug Gene Interaction Database)ZNF37A
DoCM (Curated mutations)ZNF37A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF37A (select a term)
intoGenZNF37A
Cancer3DZNF37A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616085   
Orphanet
MedgenZNF37A
Genetic Testing Registry ZNF37A
NextProtP17032 [Medical]
TSGene7587
GENETestsZNF37A
Target ValidationZNF37A
Huge Navigator ZNF37A [HugePedia]
snp3D : Map Gene to Disease7587
BioCentury BCIQZNF37A
ClinGenZNF37A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7587
Chemical/Pharm GKB GenePA37677
Clinical trialZNF37A
Miscellaneous
canSAR (ICR)ZNF37A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF37A
EVEXZNF37A
GoPubMedZNF37A
iHOPZNF37A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:50:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.