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ZNF383 (zinc finger protein 383)

Identity

Alias_symbol (synonym)FLJ35863
Other aliasHSD17
HGNC (Hugo) ZNF383
LocusID (NCBI) 163087
Atlas_Id 76126
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37217926 and ends at 37243924 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCL2L13 (22q11.21) / ZNF383 (19q13.12)URI1 (19q12) / ZNF383 (19q13.12)BCL2L13 ZNF383
C19orf2 ZNF383

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF383   18609
Cards
Entrez_Gene (NCBI)ZNF383  163087  zinc finger protein 383
AliasesHSD17
GeneCards (Weizmann)ZNF383
Ensembl hg19 (Hinxton)ENSG00000188283 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188283 [Gene_View]  chr19:37217926-37243924 [Contig_View]  ZNF383 [Vega]
ICGC DataPortalENSG00000188283
TCGA cBioPortalZNF383
AceView (NCBI)ZNF383
Genatlas (Paris)ZNF383
WikiGenes163087
SOURCE (Princeton)ZNF383
Genetics Home Reference (NIH)ZNF383
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF383  -     chr19:37217926-37243924 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF383  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZNF383 - 19q13.12 [CytoView hg19]  ZNF383 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZNF383 [Mapview hg19]  ZNF383 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091760 AK093182 AK122892 AY260141 AY438646
RefSeq transcript (Entrez)NM_001345947 NM_001345948 NM_001345949 NM_152604
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF383
Cluster EST : UnigeneHs.590975 [ NCBI ]
CGAP (NCI)Hs.590975
Alternative Splicing GalleryENSG00000188283
Gene ExpressionZNF383 [ NCBI-GEO ]   ZNF383 [ EBI - ARRAY_EXPRESS ]   ZNF383 [ SEEK ]   ZNF383 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF383 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)163087
GTEX Portal (Tissue expression)ZNF383
Human Protein AtlasENSG00000188283-ZNF383 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NA42   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NA42  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NA42
Splice isoforms : SwissVarQ8NA42
PhosPhoSitePlusQ8NA42
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-H2C2_2 (PF13465)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13465   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF383
DMDM Disease mutations163087
Blocks (Seattle)ZNF383
SuperfamilyQ8NA42
Human Protein Atlas [tissue]ENSG00000188283-ZNF383 [tissue]
Peptide AtlasQ8NA42
HPRD15786
IPIIPI00167901   
Protein Interaction databases
DIP (DOE-UCLA)Q8NA42
IntAct (EBI)Q8NA42
FunCoupENSG00000188283
BioGRIDZNF383
STRING (EMBL)ZNF383
ZODIACZNF383
Ontologies - Pathways
QuickGOQ8NA42
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear membrane  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  nuclear membrane  metal ion binding  
NDEx NetworkZNF383
Atlas of Cancer Signalling NetworkZNF383
Wikipedia pathwaysZNF383
Orthology - Evolution
OrthoDB163087
GeneTree (enSembl)ENSG00000188283
Phylogenetic Trees/Animal Genes : TreeFamZNF383
HOVERGENQ8NA42
HOGENOMQ8NA42
Homologs : HomoloGeneZNF383
Homology/Alignments : Family Browser (UCSC)ZNF383
Gene fusions - Rearrangements
Fusion: TCGABCL2L13 ZNF383
Fusion: TCGAC19orf2 ZNF383
Fusion: Tumor Portal ZNF383
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF383 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF383
dbVarZNF383
ClinVarZNF383
1000_GenomesZNF383 
Exome Variant ServerZNF383
ExAC (Exome Aggregation Consortium)ENSG00000188283
GNOMAD BrowserENSG00000188283
Genetic variants : HAPMAP163087
Genomic Variants (DGV)ZNF383 [DGVbeta]
DECIPHERZNF383 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF383 
Mutations
ICGC Data PortalZNF383 
TCGA Data PortalZNF383 
Broad Tumor PortalZNF383
OASIS PortalZNF383 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF383  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF383
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF383
DgiDB (Drug Gene Interaction Database)ZNF383
DoCM (Curated mutations)ZNF383 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF383 (select a term)
intoGenZNF383
Cancer3DZNF383(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF383
Genetic Testing Registry ZNF383
NextProtQ8NA42 [Medical]
TSGene163087
GENETestsZNF383
Target ValidationZNF383
Huge Navigator ZNF383 [HugePedia]
snp3D : Map Gene to Disease163087
BioCentury BCIQZNF383
ClinGenZNF383
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD163087
Chemical/Pharm GKB GenePA134903145
Clinical trialZNF383
Miscellaneous
canSAR (ICR)ZNF383 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF383
EVEXZNF383
GoPubMedZNF383
iHOPZNF383
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:01 CET 2017

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