Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZNF391 (zinc finger protein 391)

Identity

Alias_symbol (synonym)dJ153G14.3
Other alias
HGNC (Hugo) ZNF391
LocusID (NCBI) 346157
Atlas_Id 76132
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 27388718 and ends at 27403907 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IQCG (3q29) / ZNF391 (6p22.1)ZNF391 (6p22.1) / IQCG (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF391   18779
Cards
Entrez_Gene (NCBI)ZNF391  346157  zinc finger protein 391
AliasesdJ153G14.3
GeneCards (Weizmann)ZNF391
Ensembl hg19 (Hinxton)ENSG00000124613 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124613 [Gene_View]  ENSG00000124613 [Sequence]  chr6:27388718-27403907 [Contig_View]  ZNF391 [Vega]
ICGC DataPortalENSG00000124613
TCGA cBioPortalZNF391
AceView (NCBI)ZNF391
Genatlas (Paris)ZNF391
WikiGenes346157
SOURCE (Princeton)ZNF391
Genetics Home Reference (NIH)ZNF391
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF391  -     chr6:27388718-27403907 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF391  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF391 - 6p22.1 [CytoView hg19]  ZNF391 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF391 [Mapview hg19]  ZNF391 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092633 AK294965 BC035154 BC132797 BC156667
RefSeq transcript (Entrez)NM_001013719 NM_001076781 NM_001322288 NM_001322289 NM_001322293
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF391
Cluster EST : UnigeneHs.670888 [ NCBI ]
CGAP (NCI)Hs.670888
Alternative Splicing GalleryENSG00000124613
Gene ExpressionZNF391 [ NCBI-GEO ]   ZNF391 [ EBI - ARRAY_EXPRESS ]   ZNF391 [ SEEK ]   ZNF391 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF391 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)346157
GTEX Portal (Tissue expression)ZNF391
Human Protein AtlasENSG00000124613-ZNF391 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJN7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJN7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJN7
Splice isoforms : SwissVarQ9UJN7
PhosPhoSitePlusQ9UJN7
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF391
DMDM Disease mutations346157
Blocks (Seattle)ZNF391
SuperfamilyQ9UJN7
Human Protein Atlas [tissue]ENSG00000124613-ZNF391 [tissue]
Peptide AtlasQ9UJN7
HPRD18461
IPIIPI00296668   IPI00884042   IPI00867504   IPI00947188   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJN7
IntAct (EBI)Q9UJN7
FunCoupENSG00000124613
BioGRIDZNF391
STRING (EMBL)ZNF391
ZODIACZNF391
Ontologies - Pathways
QuickGOQ9UJN7
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF391
Atlas of Cancer Signalling NetworkZNF391
Wikipedia pathwaysZNF391
Orthology - Evolution
OrthoDB346157
GeneTree (enSembl)ENSG00000124613
Phylogenetic Trees/Animal Genes : TreeFamZNF391
HOVERGENQ9UJN7
HOGENOMQ9UJN7
Homologs : HomoloGeneZNF391
Homology/Alignments : Family Browser (UCSC)ZNF391
Gene fusions - Rearrangements
Fusion : QuiverZNF391
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF391 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF391
dbVarZNF391
ClinVarZNF391
1000_GenomesZNF391 
Exome Variant ServerZNF391
ExAC (Exome Aggregation Consortium)ENSG00000124613
GNOMAD BrowserENSG00000124613
Varsome BrowserZNF391
Genetic variants : HAPMAP346157
Genomic Variants (DGV)ZNF391 [DGVbeta]
DECIPHERZNF391 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF391 
Mutations
ICGC Data PortalZNF391 
TCGA Data PortalZNF391 
Broad Tumor PortalZNF391
OASIS PortalZNF391 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF391  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF391
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF391
DgiDB (Drug Gene Interaction Database)ZNF391
DoCM (Curated mutations)ZNF391 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF391 (select a term)
intoGenZNF391
Cancer3DZNF391(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZNF391
MedgenZNF391
Genetic Testing Registry ZNF391
NextProtQ9UJN7 [Medical]
TSGene346157
GENETestsZNF391
Target ValidationZNF391
Huge Navigator ZNF391 [HugePedia]
snp3D : Map Gene to Disease346157
BioCentury BCIQZNF391
ClinGenZNF391
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD346157
Chemical/Pharm GKB GenePA134868215
Clinical trialZNF391
Miscellaneous
canSAR (ICR)ZNF391 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF391
EVEXZNF391
GoPubMedZNF391
iHOPZNF391
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:39:43 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.