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ZNF394 (zinc finger protein 394)

Identity

Alias_symbol (synonym)ZKSCAN14
FLJ12298
ZSCAN46
Other alias
HGNC (Hugo) ZNF394
LocusID (NCBI) 84124
Atlas_Id 54804
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99493231 and ends at 99500308 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF394 (7q22.1) / RIN3 (14q32.12)ZNF789 (7q22.1) / ZNF394 (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF394   18832
Cards
Entrez_Gene (NCBI)ZNF394  84124  zinc finger protein 394
AliasesZKSCAN14; ZSCAN46
GeneCards (Weizmann)ZNF394
Ensembl hg19 (Hinxton)ENSG00000160908 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160908 [Gene_View]  chr7:99493231-99500308 [Contig_View]  ZNF394 [Vega]
ICGC DataPortalENSG00000160908
TCGA cBioPortalZNF394
AceView (NCBI)ZNF394
Genatlas (Paris)ZNF394
WikiGenes84124
SOURCE (Princeton)ZNF394
Genetics Home Reference (NIH)ZNF394
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF394  -     chr7:99493231-99500308 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF394  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblZNF394 - 7q22.1 [CytoView hg19]  ZNF394 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIZNF394 [Mapview hg19]  ZNF394 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ297365 AK022360 AK172865 AK222948 AY261374
RefSeq transcript (Entrez)NM_001345967 NM_001345968 NM_032164
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF394
Cluster EST : UnigeneHs.386324 [ NCBI ]
CGAP (NCI)Hs.386324
Alternative Splicing GalleryENSG00000160908
Gene ExpressionZNF394 [ NCBI-GEO ]   ZNF394 [ EBI - ARRAY_EXPRESS ]   ZNF394 [ SEEK ]   ZNF394 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF394 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84124
GTEX Portal (Tissue expression)ZNF394
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53GI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53GI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53GI3
Splice isoforms : SwissVarQ53GI3
PhosPhoSitePlusQ53GI3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF394
DMDM Disease mutations84124
Blocks (Seattle)ZNF394
SuperfamilyQ53GI3
Human Protein AtlasENSG00000160908
Peptide AtlasQ53GI3
HPRD18333
IPIIPI00550333   IPI00878702   IPI00807601   
Protein Interaction databases
DIP (DOE-UCLA)Q53GI3
IntAct (EBI)Q53GI3
FunCoupENSG00000160908
BioGRIDZNF394
STRING (EMBL)ZNF394
ZODIACZNF394
Ontologies - Pathways
QuickGOQ53GI3
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF394
Atlas of Cancer Signalling NetworkZNF394
Wikipedia pathwaysZNF394
Orthology - Evolution
OrthoDB84124
GeneTree (enSembl)ENSG00000160908
Phylogenetic Trees/Animal Genes : TreeFamZNF394
HOVERGENQ53GI3
HOGENOMQ53GI3
Homologs : HomoloGeneZNF394
Homology/Alignments : Family Browser (UCSC)ZNF394
Gene fusions - Rearrangements
Fusion : MitelmanZNF789/ZNF394 [7q22.1/7q22.1]  [t(7;7)(q22;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF394 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF394
dbVarZNF394
ClinVarZNF394
1000_GenomesZNF394 
Exome Variant ServerZNF394
ExAC (Exome Aggregation Consortium)ZNF394 (select the gene name)
Genetic variants : HAPMAP84124
Genomic Variants (DGV)ZNF394 [DGVbeta]
DECIPHERZNF394 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF394 
Mutations
ICGC Data PortalZNF394 
TCGA Data PortalZNF394 
Broad Tumor PortalZNF394
OASIS PortalZNF394 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF394  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF394
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF394
DgiDB (Drug Gene Interaction Database)ZNF394
DoCM (Curated mutations)ZNF394 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF394 (select a term)
intoGenZNF394
Cancer3DZNF394(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF394
Genetic Testing Registry ZNF394
NextProtQ53GI3 [Medical]
TSGene84124
GENETestsZNF394
Target ValidationZNF394
Huge Navigator ZNF394 [HugePedia]
snp3D : Map Gene to Disease84124
BioCentury BCIQZNF394
ClinGenZNF394
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84124
Chemical/Pharm GKB GenePA38702
Clinical trialZNF394
Miscellaneous
canSAR (ICR)ZNF394 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF394
EVEXZNF394
GoPubMedZNF394
iHOPZNF394
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:19:29 CEST 2017

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