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ZNF396 (zinc finger protein 396)

Identity

Alias_symbol (synonym)ZSCAN14
FLJ31213
Other alias
HGNC (Hugo) ZNF396
LocusID (NCBI) 252884
Atlas_Id 55035
Location 18q12.2  [Link to chromosome band 18q12]
Location_base_pair Starts at 35366697 and ends at 35377337 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NEDD4L (18q21.31) / ZNF396 (18q12.2)NEDD4L 18q21.31 / ZNF396 18q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF396   18824
Cards
Entrez_Gene (NCBI)ZNF396  252884  zinc finger protein 396
AliasesZSCAN14
GeneCards (Weizmann)ZNF396
Ensembl hg19 (Hinxton)ENSG00000186496 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186496 [Gene_View]  chr18:35366697-35377337 [Contig_View]  ZNF396 [Vega]
ICGC DataPortalENSG00000186496
TCGA cBioPortalZNF396
AceView (NCBI)ZNF396
Genatlas (Paris)ZNF396
WikiGenes252884
SOURCE (Princeton)ZNF396
Genetics Home Reference (NIH)ZNF396
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF396  -     chr18:35366697-35377337 -  18q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF396  -     18q12.2   [Description]    (hg19-Feb_2009)
EnsemblZNF396 - 18q12.2 [CytoView hg19]  ZNF396 - 18q12.2 [CytoView hg38]
Mapping of homologs : NCBIZNF396 [Mapview hg19]  ZNF396 [Mapview hg38]
OMIM609600   
Gene and transcription
Genbank (Entrez)AF492004 AF533251 AK055775 BC036765 BC130288
RefSeq transcript (Entrez)NM_001322286 NM_001322290 NM_001322291 NM_145756
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF396
Cluster EST : UnigeneHs.351005 [ NCBI ]
CGAP (NCI)Hs.351005
Alternative Splicing GalleryENSG00000186496
Gene ExpressionZNF396 [ NCBI-GEO ]   ZNF396 [ EBI - ARRAY_EXPRESS ]   ZNF396 [ SEEK ]   ZNF396 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF396 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)252884
GTEX Portal (Tissue expression)ZNF396
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96N95   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96N95  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96N95
Splice isoforms : SwissVarQ96N95
PhosPhoSitePlusQ96N95
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF396
DMDM Disease mutations252884
Blocks (Seattle)ZNF396
SuperfamilyQ96N95
Human Protein AtlasENSG00000186496
Peptide AtlasQ96N95
HPRD18334
IPIIPI00102297   IPI00217546   IPI00790513   
Protein Interaction databases
DIP (DOE-UCLA)Q96N95
IntAct (EBI)Q96N95
FunCoupENSG00000186496
BioGRIDZNF396
STRING (EMBL)ZNF396
ZODIACZNF396
Ontologies - Pathways
QuickGOQ96N95
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF396
Atlas of Cancer Signalling NetworkZNF396
Wikipedia pathwaysZNF396
Orthology - Evolution
OrthoDB252884
GeneTree (enSembl)ENSG00000186496
Phylogenetic Trees/Animal Genes : TreeFamZNF396
HOVERGENQ96N95
HOGENOMQ96N95
Homologs : HomoloGeneZNF396
Homology/Alignments : Family Browser (UCSC)ZNF396
Gene fusions - Rearrangements
Fusion : MitelmanNEDD4L/ZNF396 [18q21.31/18q12.2]  [t(18;18)(q12;q21)]  
Fusion: TCGANEDD4L 18q21.31 ZNF396 18q12.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF396 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF396
dbVarZNF396
ClinVarZNF396
1000_GenomesZNF396 
Exome Variant ServerZNF396
ExAC (Exome Aggregation Consortium)ZNF396 (select the gene name)
Genetic variants : HAPMAP252884
Genomic Variants (DGV)ZNF396 [DGVbeta]
DECIPHERZNF396 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF396 
Mutations
ICGC Data PortalZNF396 
TCGA Data PortalZNF396 
Broad Tumor PortalZNF396
OASIS PortalZNF396 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF396  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF396
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF396
DgiDB (Drug Gene Interaction Database)ZNF396
DoCM (Curated mutations)ZNF396 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF396 (select a term)
intoGenZNF396
Cancer3DZNF396(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609600   
Orphanet
MedgenZNF396
Genetic Testing Registry ZNF396
NextProtQ96N95 [Medical]
TSGene252884
GENETestsZNF396
Target ValidationZNF396
Huge Navigator ZNF396 [HugePedia]
snp3D : Map Gene to Disease252884
BioCentury BCIQZNF396
ClinGenZNF396
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD252884
Chemical/Pharm GKB GenePA38697
Clinical trialZNF396
Miscellaneous
canSAR (ICR)ZNF396 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF396
EVEXZNF396
GoPubMedZNF396
iHOPZNF396
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:19:29 CEST 2017

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