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ZNF397 (zinc finger protein 397)

Identity

Alias_namesZNF47
zinc finger protein 47
Alias_symbol (synonym)ZSCAN15
MGC13250
Other alias
HGNC (Hugo) ZNF397
LocusID (NCBI) 84307
Atlas_Id 76134
Location 18q12.2  [Link to chromosome band 18q12]
Location_base_pair Starts at 35241030 and ends at 35247189 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CGA (6q14.3) / ZNF397 (18q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF397   18818
Cards
Entrez_Gene (NCBI)ZNF397  84307  zinc finger protein 397
AliasesZNF47; ZSCAN15
GeneCards (Weizmann)ZNF397
Ensembl hg19 (Hinxton)ENSG00000186812 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186812 [Gene_View]  chr18:35241030-35247189 [Contig_View]  ZNF397 [Vega]
ICGC DataPortalENSG00000186812
TCGA cBioPortalZNF397
AceView (NCBI)ZNF397
Genatlas (Paris)ZNF397
WikiGenes84307
SOURCE (Princeton)ZNF397
Genetics Home Reference (NIH)ZNF397
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF397  -     chr18:35241030-35247189 +  18q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF397  -     18q12.2   [Description]    (hg19-Feb_2009)
EnsemblZNF397 - 18q12.2 [CytoView hg19]  ZNF397 - 18q12.2 [CytoView hg38]
Mapping of homologs : NCBIZNF397 [Mapview hg19]  ZNF397 [Mapview hg38]
OMIM609601   
Gene and transcription
Genbank (Entrez)AA805259 AF533250 AK027384 AK311533 AY157641
RefSeq transcript (Entrez)NM_001135178 NM_032347
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF397
Cluster EST : UnigeneHs.591061 [ NCBI ]
CGAP (NCI)Hs.591061
Alternative Splicing GalleryENSG00000186812
Gene ExpressionZNF397 [ NCBI-GEO ]   ZNF397 [ EBI - ARRAY_EXPRESS ]   ZNF397 [ SEEK ]   ZNF397 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF397 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84307
GTEX Portal (Tissue expression)ZNF397
Human Protein AtlasENSG00000186812-ZNF397 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NF99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NF99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NF99
Splice isoforms : SwissVarQ8NF99
PhosPhoSitePlusQ8NF99
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam02023    pfam00096   
Domain families : Smart (EMBL)SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF397
DMDM Disease mutations84307
Blocks (Seattle)ZNF397
SuperfamilyQ8NF99
Human Protein Atlas [tissue]ENSG00000186812-ZNF397 [tissue]
Peptide AtlasQ8NF99
HPRD18335
IPIIPI00168810   IPI00219791   IPI00385623   IPI00101964   
Protein Interaction databases
DIP (DOE-UCLA)Q8NF99
IntAct (EBI)Q8NF99
FunCoupENSG00000186812
BioGRIDZNF397
STRING (EMBL)ZNF397
ZODIACZNF397
Ontologies - Pathways
QuickGOQ8NF99
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleolus  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  microtubule cytoskeleton  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleolus  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  microtubule cytoskeleton  metal ion binding  
NDEx NetworkZNF397
Atlas of Cancer Signalling NetworkZNF397
Wikipedia pathwaysZNF397
Orthology - Evolution
OrthoDB84307
GeneTree (enSembl)ENSG00000186812
Phylogenetic Trees/Animal Genes : TreeFamZNF397
HOVERGENQ8NF99
HOGENOMQ8NF99
Homologs : HomoloGeneZNF397
Homology/Alignments : Family Browser (UCSC)ZNF397
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF397
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF397 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF397
dbVarZNF397
ClinVarZNF397
1000_GenomesZNF397 
Exome Variant ServerZNF397
ExAC (Exome Aggregation Consortium)ENSG00000186812
GNOMAD BrowserENSG00000186812
Genetic variants : HAPMAP84307
Genomic Variants (DGV)ZNF397 [DGVbeta]
DECIPHERZNF397 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF397 
Mutations
ICGC Data PortalZNF397 
TCGA Data PortalZNF397 
Broad Tumor PortalZNF397
OASIS PortalZNF397 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF397  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF397
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF397
DgiDB (Drug Gene Interaction Database)ZNF397
DoCM (Curated mutations)ZNF397 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF397 (select a term)
intoGenZNF397
Cancer3DZNF397(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609601   
Orphanet
MedgenZNF397
Genetic Testing Registry ZNF397
NextProtQ8NF99 [Medical]
TSGene84307
GENETestsZNF397
Target ValidationZNF397
Huge Navigator ZNF397 [HugePedia]
snp3D : Map Gene to Disease84307
BioCentury BCIQZNF397
ClinGenZNF397
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84307
Chemical/Pharm GKB GenePA38694
Clinical trialZNF397
Miscellaneous
canSAR (ICR)ZNF397 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF397
EVEXZNF397
GoPubMedZNF397
iHOPZNF397
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:03 CET 2017

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