ZNF397 (zinc finger protein 397)

2014-11-01  

Identity

HGNC
ZNF397
LOCATION
18q12.2
LOCUSID
84307
ALIAS
ZNF47,ZSCAN15
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 84307
MIM: 609601
HGNC: 18818
Ensembl: ENSG00000186812

Variants:

dbSNP: 84307
ClinVar: 84307
TCGA: ENSG00000186812
COSMIC: ZNF397

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000186812ENST00000261333Q8NF99
ENSG00000186812ENST00000330501Q8NF99
ENSG00000186812ENST00000355632Q96K65
ENSG00000186812ENST00000585800Q8NF99
ENSG00000186812ENST00000588119K7EIM5
ENSG00000186812ENST00000591206Q8NF99
ENSG00000186812ENST00000592264K7ERU5
ENSG00000186812ENST00000601719M0R288

Expression (GTEx)

0
5
10
15
20
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
183696532008ZNF397, a new class of interphase to early prophase-specific, SCAN-zinc-finger, mammalian centromere protein.3

Citation

Dessen P

ZNF397 (zinc finger protein 397)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/76134/znf397