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ZNF398 (zinc finger protein 398)

Identity

Alias_symbol (synonym)ZER6
KIAA1339
P51
P71
Other alias
HGNC (Hugo) ZNF398
LocusID (NCBI) 57541
Atlas_Id 76135
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 149126416 and ends at 149183026 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZNF398 (7q36.1) / PARG (10q11.23)ZNF398 (7q36.1) / RNF187 (1q42.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF398   18373
Cards
Entrez_Gene (NCBI)ZNF398  57541  zinc finger protein 398
AliasesP51; P71; ZER6
GeneCards (Weizmann)ZNF398
Ensembl hg19 (Hinxton)ENSG00000197024 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197024 [Gene_View]  chr7:149126416-149183026 [Contig_View]  ZNF398 [Vega]
ICGC DataPortalENSG00000197024
TCGA cBioPortalZNF398
AceView (NCBI)ZNF398
Genatlas (Paris)ZNF398
WikiGenes57541
SOURCE (Princeton)ZNF398
Genetics Home Reference (NIH)ZNF398
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF398  -     chr7:149126416-149183026 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF398  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblZNF398 - 7q36.1 [CytoView hg19]  ZNF398 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIZNF398 [Mapview hg19]  ZNF398 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037760 AK026380 AK290499 AK301890 AK304369
RefSeq transcript (Entrez)NM_020781 NM_170686
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF398
Cluster EST : UnigeneHs.632032 [ NCBI ]
CGAP (NCI)Hs.632032
Alternative Splicing GalleryENSG00000197024
Gene ExpressionZNF398 [ NCBI-GEO ]   ZNF398 [ EBI - ARRAY_EXPRESS ]   ZNF398 [ SEEK ]   ZNF398 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF398 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57541
GTEX Portal (Tissue expression)ZNF398
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TD17   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TD17  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TD17
Splice isoforms : SwissVarQ8TD17
PhosPhoSitePlusQ8TD17
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)DUF3669_Znf    KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)DUF3669 (PF12417)    KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam12417    pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF398
DMDM Disease mutations57541
Blocks (Seattle)ZNF398
SuperfamilyQ8TD17
Human Protein AtlasENSG00000197024
Peptide AtlasQ8TD17
HPRD18336
IPIIPI00940686   IPI00170773   IPI00152420   
Protein Interaction databases
DIP (DOE-UCLA)Q8TD17
IntAct (EBI)Q8TD17
FunCoupENSG00000197024
BioGRIDZNF398
STRING (EMBL)ZNF398
ZODIACZNF398
Ontologies - Pathways
QuickGOQ8TD17
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF398
Atlas of Cancer Signalling NetworkZNF398
Wikipedia pathwaysZNF398
Orthology - Evolution
OrthoDB57541
GeneTree (enSembl)ENSG00000197024
Phylogenetic Trees/Animal Genes : TreeFamZNF398
HOVERGENQ8TD17
HOGENOMQ8TD17
Homologs : HomoloGeneZNF398
Homology/Alignments : Family Browser (UCSC)ZNF398
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF398 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF398
dbVarZNF398
ClinVarZNF398
1000_GenomesZNF398 
Exome Variant ServerZNF398
ExAC (Exome Aggregation Consortium)ZNF398 (select the gene name)
Genetic variants : HAPMAP57541
Genomic Variants (DGV)ZNF398 [DGVbeta]
DECIPHERZNF398 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF398 
Mutations
ICGC Data PortalZNF398 
TCGA Data PortalZNF398 
Broad Tumor PortalZNF398
OASIS PortalZNF398 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF398  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF398
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF398
DgiDB (Drug Gene Interaction Database)ZNF398
DoCM (Curated mutations)ZNF398 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF398 (select a term)
intoGenZNF398
Cancer3DZNF398(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF398
Genetic Testing Registry ZNF398
NextProtQ8TD17 [Medical]
TSGene57541
GENETestsZNF398
Target ValidationZNF398
Huge Navigator ZNF398 [HugePedia]
snp3D : Map Gene to Disease57541
BioCentury BCIQZNF398
ClinGenZNF398
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57541
Chemical/Pharm GKB GenePA38532
Clinical trialZNF398
Miscellaneous
canSAR (ICR)ZNF398 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF398
EVEXZNF398
GoPubMedZNF398
iHOPZNF398
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:22 CEST 2017

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