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ZNF404 (zinc finger protein 404)

Identity

Other alias-
HGNC (Hugo) ZNF404
LocusID (NCBI) 342908
Atlas_Id 76136
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43872363 and ends at 43880136 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF404   19417
Cards
Entrez_Gene (NCBI)ZNF404  342908  zinc finger protein 404
Aliases
GeneCards (Weizmann)ZNF404
Ensembl hg19 (Hinxton)ENSG00000176222 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176222 [Gene_View]  chr19:43872363-43880136 [Contig_View]  ZNF404 [Vega]
ICGC DataPortalENSG00000176222
TCGA cBioPortalZNF404
AceView (NCBI)ZNF404
Genatlas (Paris)ZNF404
WikiGenes342908
SOURCE (Princeton)ZNF404
Genetics Home Reference (NIH)ZNF404
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF404  -     chr19:43872363-43880136 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF404  -     19q13.31   [Description]    (hg19-Feb_2009)
EnsemblZNF404 - 19q13.31 [CytoView hg19]  ZNF404 - 19q13.31 [CytoView hg38]
Mapping of homologs : NCBIZNF404 [Mapview hg19]  ZNF404 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK300120 AY166785 BC101332 BC101333 BQ188692
RefSeq transcript (Entrez)NM_001033719
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF404
Cluster EST : UnigeneHs.76561 [ NCBI ]
CGAP (NCI)Hs.76561
Alternative Splicing GalleryENSG00000176222
Gene ExpressionZNF404 [ NCBI-GEO ]   ZNF404 [ EBI - ARRAY_EXPRESS ]   ZNF404 [ SEEK ]   ZNF404 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF404 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342908
GTEX Portal (Tissue expression)ZNF404
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ494X3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ494X3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ494X3
Splice isoforms : SwissVarQ494X3
PhosPhoSitePlusQ494X3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF404
DMDM Disease mutations342908
Blocks (Seattle)ZNF404
SuperfamilyQ494X3
Human Protein AtlasENSG00000176222
Peptide AtlasQ494X3
HPRD18787
IPIIPI00247202   
Protein Interaction databases
DIP (DOE-UCLA)Q494X3
IntAct (EBI)Q494X3
FunCoupENSG00000176222
BioGRIDZNF404
STRING (EMBL)ZNF404
ZODIACZNF404
Ontologies - Pathways
QuickGOQ494X3
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZNF404
Atlas of Cancer Signalling NetworkZNF404
Wikipedia pathwaysZNF404
Orthology - Evolution
OrthoDB342908
GeneTree (enSembl)ENSG00000176222
Phylogenetic Trees/Animal Genes : TreeFamZNF404
HOVERGENQ494X3
HOGENOMQ494X3
Homologs : HomoloGeneZNF404
Homology/Alignments : Family Browser (UCSC)ZNF404
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF404 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF404
dbVarZNF404
ClinVarZNF404
1000_GenomesZNF404 
Exome Variant ServerZNF404
ExAC (Exome Aggregation Consortium)ZNF404 (select the gene name)
Genetic variants : HAPMAP342908
Genomic Variants (DGV)ZNF404 [DGVbeta]
DECIPHERZNF404 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF404 
Mutations
ICGC Data PortalZNF404 
TCGA Data PortalZNF404 
Broad Tumor PortalZNF404
OASIS PortalZNF404 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF404  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF404
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF404
DgiDB (Drug Gene Interaction Database)ZNF404
DoCM (Curated mutations)ZNF404 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF404 (select a term)
intoGenZNF404
Cancer3DZNF404(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZNF404
Genetic Testing Registry ZNF404
NextProtQ494X3 [Medical]
TSGene342908
GENETestsZNF404
Target ValidationZNF404
Huge Navigator ZNF404 [HugePedia]
snp3D : Map Gene to Disease342908
BioCentury BCIQZNF404
ClinGenZNF404
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342908
Chemical/Pharm GKB GenePA134880927
Clinical trialZNF404
Miscellaneous
canSAR (ICR)ZNF404 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF404
EVEXZNF404
GoPubMedZNF404
iHOPZNF404
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:50:22 CEST 2017

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