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ZNF407 (zinc finger protein 407)

Identity

Alias_symbol (synonym)FLJ20307
FLJ13839
KIAA1703
Other alias-
HGNC (Hugo) ZNF407
LocusID (NCBI) 55628
Atlas_Id 76137
Location 18q22.3  [Link to chromosome band 18q22]
Location_base_pair Starts at 74630963 and ends at 74921057 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NBPF11 (1q21.1) / ZNF407 (18q22.3)TMEM176A (7q36.1) / ZNF407 (18q22.3)TMEM50A (1p36.11) / ZNF407 (18q22.3)
ZNF407 (18q22.3) / ATG7 (3p25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZNF407   19904
Cards
Entrez_Gene (NCBI)ZNF407  55628  zinc finger protein 407
Aliases
GeneCards (Weizmann)ZNF407
Ensembl hg19 (Hinxton)ENSG00000215421 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215421 [Gene_View]  chr18:74630963-74921057 [Contig_View]  ZNF407 [Vega]
ICGC DataPortalENSG00000215421
TCGA cBioPortalZNF407
AceView (NCBI)ZNF407
Genatlas (Paris)ZNF407
WikiGenes55628
SOURCE (Princeton)ZNF407
Genetics Home Reference (NIH)ZNF407
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF407  -     chr18:74630963-74921057 +  18q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF407  -     18q22.3   [Description]    (hg19-Feb_2009)
EnsemblZNF407 - 18q22.3 [CytoView hg19]  ZNF407 - 18q22.3 [CytoView hg38]
Mapping of homologs : NCBIZNF407 [Mapview hg19]  ZNF407 [Mapview hg38]
OMIM615894   
Gene and transcription
Genbank (Entrez)AB051490 AK000314 AK000317 AK023901 AK056288
RefSeq transcript (Entrez)NM_001146189 NM_001146190 NM_017757
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF407
Cluster EST : UnigeneHs.536490 [ NCBI ]
CGAP (NCI)Hs.536490
Alternative Splicing GalleryENSG00000215421
Gene ExpressionZNF407 [ NCBI-GEO ]   ZNF407 [ EBI - ARRAY_EXPRESS ]   ZNF407 [ SEEK ]   ZNF407 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF407 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55628
GTEX Portal (Tissue expression)ZNF407
Human Protein AtlasENSG00000215421-ZNF407 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9C0G0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9C0G0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9C0G0
Splice isoforms : SwissVarQ9C0G0
PhosPhoSitePlusQ9C0G0
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd    Znf_U1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZNF407
DMDM Disease mutations55628
Blocks (Seattle)ZNF407
SuperfamilyQ9C0G0
Human Protein Atlas [tissue]ENSG00000215421-ZNF407 [tissue]
Peptide AtlasQ9C0G0
HPRD11713
IPIIPI00043516   IPI00869072   IPI00302008   
Protein Interaction databases
DIP (DOE-UCLA)Q9C0G0
IntAct (EBI)Q9C0G0
FunCoupENSG00000215421
BioGRIDZNF407
STRING (EMBL)ZNF407
ZODIACZNF407
Ontologies - Pathways
QuickGOQ9C0G0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZNF407
Atlas of Cancer Signalling NetworkZNF407
Wikipedia pathwaysZNF407
Orthology - Evolution
OrthoDB55628
GeneTree (enSembl)ENSG00000215421
Phylogenetic Trees/Animal Genes : TreeFamZNF407
HOVERGENQ9C0G0
HOGENOMQ9C0G0
Homologs : HomoloGeneZNF407
Homology/Alignments : Family Browser (UCSC)ZNF407
Gene fusions - Rearrangements
Fusion: Tumor Portal ZNF407
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF407 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF407
dbVarZNF407
ClinVarZNF407
1000_GenomesZNF407 
Exome Variant ServerZNF407
ExAC (Exome Aggregation Consortium)ENSG00000215421
GNOMAD BrowserENSG00000215421
Genetic variants : HAPMAP55628
Genomic Variants (DGV)ZNF407 [DGVbeta]
DECIPHERZNF407 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF407 
Mutations
ICGC Data PortalZNF407 
TCGA Data PortalZNF407 
Broad Tumor PortalZNF407
OASIS PortalZNF407 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF407  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZNF407
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF407
DgiDB (Drug Gene Interaction Database)ZNF407
DoCM (Curated mutations)ZNF407 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF407 (select a term)
intoGenZNF407
Cancer3DZNF407(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615894   
Orphanet
MedgenZNF407
Genetic Testing Registry ZNF407
NextProtQ9C0G0 [Medical]
TSGene55628
GENETestsZNF407
Target ValidationZNF407
Huge Navigator ZNF407 [HugePedia]
snp3D : Map Gene to Disease55628
BioCentury BCIQZNF407
ClinGenZNF407
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55628
Chemical/Pharm GKB GenePA134942906
Clinical trialZNF407
Miscellaneous
canSAR (ICR)ZNF407 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF407
EVEXZNF407
GoPubMedZNF407
iHOPZNF407
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:37:03 CET 2017

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